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List of sequenced bacterial genomes

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List of sequenced bacterial genomes

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This list of sequenced eubacterial genomes contains all the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched [1] on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases[verification needed].

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.

Contents

Actinobacteria

Species Strain Type Base Pairs Genes Reference GeneBank Identifier
Corynebacterium diphtheriae C7 (beta) Actinobacteridae 2,499,189 Unpublished CP003210
Corynebacterium diphtheriae PW8 Actinobacteridae 2,530,683 Unpublished CP003216

Aquificae

Species Strain Type Base Pairs Genes Reference GeneBank Identifier
Aquifex aeolicus VF5 Aquificae 1,551,335 1,522 [2] Chromosome NC_000918

Plasmid ece1 NC_001880

Armatimonadetes

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Bacteroidetes/Chlorobi group

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Bacteroides fragilis NCTC9343 Bacteroidetes 5,205,140 4,260 [3] Chromosome CR626927

Plasmid pBF9343 CR626928
Bacteroides fragilis YCH46 Bacteroidetes 5,277,274 4,578 [4] Chromosome AP006841

Plasmid pBFY46 AP006842
Bacteroides thetaiotaomicron VPI-5482 Bacteroidetes 6,260,361 4,778 [5] Chromosome AE015928

Plasmid p5482 AY171301
Candidatus Amoebophilus asiaticus 5a2 Bacteroidetes 1,884,364 [6] CP001102
Chlorobaculum parvum NCIB 8327 Chlorobi 2,289,249 DOE Joint Genome Institute CP001099
Chlorobium chlorochromatii CaD3 Chlorobi 2,572,079 2,002 DOE Joint Genome Institute CP000108
Chlorobium ferrooxidans DSM 13031 Chlorobi DOE Joint Genome Institute AASE00000000
Chlorobium limicola DSM 245 Chlorobi 2,763,181 DOE Joint Genome Institute NC_010803
Chlorobium phaeobacteroides BS1 Chlorobi 2,736,403 DOE Joint Genome Institute NC_010831
Chlorobium phaeobacteroides DSM 266 Chlorobi 3,133,902 DOE Joint Genome Institute NC_008639
Chlorobium phaeovibrioides DSM 265 Chlorobi 1,966,858 DOE Joint Genome Institute NC_009337
Chlorobium tepidum TLS Chlorobi 2,154,946 2,255 [7] AE006470
Chloroherpeton thalassium ATCC 35110 Chlorobi 3,293,456 DOE Joint Genome Institute CP001100
Cytophaga hutchinsonii ATCC 33406 Chlorobi 4,433,218 [8] CP000383
Haliscomenobacter hydrossis DSM 1100 Bacteroidetes 8,371,686 [9] Chromosome CP002691

Plasmid pHALHY01 CP002692
Plasmid pHALHY02 CP002693
Plasmid pHALHY03 CP002694
Ignavibacterium album JCM 16511 Chlorobi 3,658,997 University of Copenhagen CP003418
Pelodictyon luteolum (Chlorobium luteolum) DSM 273 Chlorobi 2,364,842 2,083 DOE Joint Genome Institute CP000096
Pelodictyon phaeoclathratiforme BU-1 Chlorobi 3,018,238 DOE Joint Genome Institute CP001110
Porphyromonas gingivalis ATCC 33277 Bacteroidetes 2,354,886 [10] NC_010729
Porphyromonas gingivalis W83 Bacteroidetes 2,343,476 1,909 [11] NC_002950
Prosthecochloris aestuarii DSM 271 Chlorobi 2,512,923 DOE Joint Genome Institute Chromosome CP001108

Plasmid pPAES01 CP001109
Salinibacter ruber DSM 13855 Bacteroidetes 3,551,823 2,801 [12] NC_007677
Salinibacter ruber M8 Bacteroidetes 3,619,447 [13] Chromosome FP565814

Plasmid pSR11 FP565810
Plasmid pSR56 FP565811
Plasmid pSR61 FP565812
Plasmid pSR84 NC_014157
Saprospira grandis str. Lewin Bacteroidetes 4,345,237 University of Hawaii at Manoa Chromosome CP002831

Plasmid [http://www.ncbi.nlm.nih.gov/nuccore/CP002832 CP002832

Caldiserica

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Chlamydiae/Verrucomicrobia group

Species Strain Type Base Pairs Genes Reference
Chlamydia muridarum Nigg Chlamydiae 1,072,950 904 [14]
Chlamydia trachomatis AHAR13 Chlamydiae 1,044,459 911 [15]
Chlamydia trachomatis DUW Chlamydiae 1,042,519 894 [16]
Chlamydophila abortus S26-3 Chlamydiae 1,144,377 961 [17]
Chlamydophila caviae GPIC Chlamydiae 1,173,390 998 [18]
Chlamydophila felis FeC56 Chlamydiae 1,166,239 1,005 Unpublished[1]
Chlamydophila pneumoniae AR39 Chlamydiae 1,229,853 1,110 [14]
Chlamydophila pneumoniae CWL029 Chlamydiae 1,230,230 1,052 [19]
Chlamydophila pneumoniae J138 Chlamydiae 1,226,565 1,069 [20]
Chlamydophila pneumoniae TW183 Chlamydiae 1,225,935 1,113 Unpublished[1]
Parachlamy diaspecies UWE25 Chlamydiae 2,414,465 2,031 [21]

Chloroflexi

Species Strain Type Base Pairs Genes Reference
Dehalococcoides etheno 195 Dehalococcoidetes 1,469,720 1,580 [22]
Dehalococcoides species CBDB1 Dehalococcoidetes 1,395,502 1,458 [23]

Chrysiogenetes

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Cyanobacteria

Species Strain Type Base Pairs Genes Reference
Anabaena nostoc PCC7120 Nostocales 6,413,771 5,368 [24]
Anabaena variabilis ATCC29413 Nostocales 6,365,727 5,039 Unpublished[1]
Cyanobacteria bacterium YellowstoneA Chroococcales 2,932,766 2,760 [25]
Cyanobacteria bacterium YellowstoneB Chroococcales 3,046,682 2,862 [25]
Gloeobacter violaceus PCC7421 Gloeobacteria 4,659,019 4,430 [26]
Prochlorococcus marinus MED4 Prochlorales 1,657,990 1,716 [27]
Prochlorococcus marinus MIT9312 Prochlorales 1,709,204 1,809 Unpublished[1]
Prochlorococcus marinus MIT9313 Prochlorales 2,410,873 2,273 [27]
Prochlorococcus marinus NATL2A Prochlorales 1,842,899 1,890 Unpublished[1]
Prochlorococcus marinus SS120 Prochlorales 1,751,080 1,882 [28]
Synechococcus elongatus PCC6301 Chroococcales 2,696,255 2,525 Unpublished[1]
Synechococcus elongatus PCC7942 Chroococcales 2,695,903 2,611 Unpublished[1]
Synechococcus species WH8102 Chroococcales 2,434,428 2,526 [29]
Synechococcus species CC9605 Chroococcales 2,510,659 2,638 Unpublished[1]
Synechococcus species CC9902 Chroococcales 2,234,828 2,304 Unpublished[1]
Synechocystis species PCC6803 Chroococcales 3,573,470 3,167 [30]
Thermosynechococcus elongatus bp1 Chroococcales 2,593,857 2,475 Unpublished[1]

Deferribacteres

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Deinococcus-Thermus

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Deinococcus deserti VCD115 Deinococcales 2,819,842 [31] Chromosome NC_012526

Plasmid 1 NC_012528
Plasmid 2 NC_012529
Plasmid 3 NC_012528
Deinococcus geothermalis DSM 11300 Deinococcales 2,467,205 2,335 DOE Joint Genome Institute Chromosome CP000359

Plasmid pDGEO01 CP000358
Plasmid pDGEO02 CP000856
Deinococcus gobiensis I-0 Deinococcales 3,137,147 [32] Chromosome CP002191

Plasmid P1 CP002192
Plasmid P2 CP002193
Plasmid P3 CP002194
Plasmid P4 CP002195
Plasmid P5 CP002196
Plasmid P6 CP002197
Deinococcus maricopensis DSM 21211 Deinococcales 3,498,530 US DOE Joint Genome Institute CP002454
Deinococcus proteolyticus MRP Deinococcales 2,147,060 US DOE Joint Genome Institute Chromosome CP002536

Plasmid pDEIPR01 CP002537
Plasmid pDEIPR02 CP002538
Plasmid pDEIPR03 CP002539
Plasmid pDEIPR04 CP002540
Deinococcus radiodurans R1 Deinococcales Chromosome 1: 2,648,638

Chromosome 2: 412,348

 Chromosome 1: 2,579

Chromosome 2: 357

 [33] Chromosome 1 NC_001263

Chromosome 2 NC_001264
Plasmid CP1 NC_000959
Plasmid MP1 NC_000958
Marinithermus hydrothermalis DSM 14884 Thermales 2,269,167 DOE Joint Genome Institute CP002630
Meiothermus ruber DSM 1279 Thermales 3,097,457 DOE Joint Genome Institute CP001743
Meiothermus silvanus DSM 9946 Thermales 3,249,394 [34] Chromosome CP002042

Plasmid pMESIL01 CP002043
Plasmid pMESIL02 CP002044
Oceanithermus profundus DSM 14977 Thermales 2,303,940 DOE Joint Genome Institute Chromosome CP002361

Plasmid pOCEPR01 [1]
Thermus scotoductus SA-01 Thermales 2,346,803 [35] Chromosome CP001962

Plasmid pTSC8 CP001963
Thermus species CCB_US3_UF1 Thermales 2,243,772 Universiti Sains Malaysia Chromosome CP003126

Plasmid pTCCB09 CP003127
Thermus thermophilus HB27 Thermales 1,894,877 1,982 [36] Chromosome AE017221

Plasmid pTT27 AE017222
Thermus thermophilus HB8 Thermales 1,849,742 1,973 Nara Institute of Science and Technology Chromsome NC_006461

Plasmid pTT27 NC_006462
Plasmid pTT8 NC_006463
Thermus thermophilus JL-18 Thermales 1,902,595 DOE Joint Genome Institute Chromosome CP003252

Plasmid pTTJL1801 CP003253
Plasmid pTTJL1802 CP003254
Thermus thermophilus SG0.5JP17-16 Thermales 1,863,201 DOE Joint Genome Institute Chromosome CP002777

Plasmid pTHTHE1601 CP002778
Truepera radiovictrix DSM 17093 Deinococcales 3,260,398 DOE Joint Genome Institute CP002049

Dictyoglomi

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Elusimicrobia

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Fibrobacteres/Acidobacteria group

Species Strain Type Base Pairs Genes Reference
Acidobacteria bacterium Ellin345 Acidobacteria 5,650,368 4,777 Unpublished[1]
Bifidobacterium longum NCC2705 Acidobacteria 2,256,640 1,727 [37]
Corynebacterium diphtheriae NCTC13129 Acidobacteria 2,488,635 2,320 [38]
Corynebacterium efficiens YS314 Acidobacteria 3,147,090 2,942 [39]
Corynebacterium glutamicum ATCC13032 Acidobacteria 3,309,401 3,099 Unpublished[1]
Unspecified Unspecified Acidobacteria 3,282,708 3,058 [40]
Corynebacterium jeikeium K411 Acidobacteria 2,462,499 2,104 [41]
Frankia species CcI3 Acidobacteria 5,433,628 4,499 Unpublished[1]
Leifsonia xyli CTCB07 Acidobacteria 2,584,158 2,030 Unpublished[1]
Mycobacterium avium k10 Acidobacteria 4,829,781 4,350 [42]
Mycobacterium bovis AF212297 Acidobacteria 4,345,492 3,953 [43]
Mycobacterium leprae TN Acidobacteria 3,268,203 2,720 [44]
Mycobacterium tuberculosis CDC1551 Acidobacteria 4,403,837 4,189 Unpublished[1]
Mycobacterium tuberculosis H37Rv Acidobacteria 4,411,532 3,999 [45]
Nocardia farcinica IFM10152 Acidobacteria 6,021,225 5,683 [46]
Propionibacterium acnes KPA171202 Acidobacteria 2,560,265 2,297 Unpublished[1]
Rubrobacter xylanophilus DSM9941 Acidobacteria 3,225,748 3,140 Unpublished[1]
Streptomyces avermitilis MA4680 Acidobacteria 9,025,608 7,577 [47]
Streptomyces coelicolor A3 Acidobacteria 8,667,507 7,825 [48]
Symbiobacterium thermophilum Strain Acidobacteria 3,566,135 3,337 [49]
Tropheryma whippelii TW0827 Acidobacteria 925,938 784 Unpublished[1]
Tropheryma whippelii Twist Acidobacteria 927,303 808 [50]
Thermobifida fusca YX Acidobacteria 3,642,249 3,110 Unpublished[1]

Firmicutes

Species Strain Type Base Pairs Genes Reference
Bacillus anthracis Ames Bacilli 5,227,293 5,311 [51]
Bacillus anthracis Sterne Bacilli 5,228,663 5,287 Unpublished[1]
Bacillus cereus ATCC10987 Bacilli 5,224,283 5,603 [52]
Bacillus cereus ATCC14579 Bacilli 5,411,809 5,234 [53]
Bacillus cereus ZK Bacilli 5,300,915 5,134 Unpublished[1]
Bacillus clausii KSMK16 Bacilli 4,303,871 4,108 [54]
Bacillus halodurans C125 Bacilli 4,202,352 4,066 [55]
Bacillus licheniformis ATCC14580 Bacilli 4,222,334 4,152 [56]
Bacillus licheniformis Unspecified Bacilli 4,222,645 4,196 [57]
Bacillus licheniformis DSM13 Bacilli 4,222,645 4,196 [57]
Bacillus subtilis 168 Bacilli 4,214,630 4,106 [58]
Bacillus thuringiensis 9727 Bacilli 5,237,682 5,117 Unpublished[1]
Carboxydothermus hydrogenoformans Z2901 Clostridia 2,401,520 2,620 Unpublished[1]
Clostridium acetobutylicum ATCC824 Clostridia 3,940,880 3,672 [59]
Clostridium difficile QCD-32g58 Clostridia 3,840,681 Unpublished[1]
Clostridium perfringens 13 Clostridia 3,031,430 2,660 [60]
Clostridium tetani E88 Clostridia 2,799,251 2,373 [61]
Desulfitobacterium hafniense Y51 Clostridia 5,727,534 5,060 [62]
Enterococcus faecalis V583 Bacilli 3,218,031 3,113 [63]
Geobacillus kaustophilus HTA426 Bacilli 3,544,776 3,498 [64]
Lactobacillus acidophilus NCFM Bacilli 1,993,564 1,864 [65]
Lactobacillus delbrueckii bulgaricus Bacilli 1,864,998 2,096 Unpublished[1]
Lactobacillus johnsonii NCC533 Bacilli 1,992,676 1,821 [66]
Lactobacillus plantarum WCFS1 Bacilli 3,308,274 3,051 [66]
Lactobacillus sakei 23K Bacilli 1,884,661 1,885 Unpublished[1]
Lactobacillus sakei sakei23K Bacilli 1,884,661 1,885 Unpublished[1]
Lactobacillus salivarius UCC118 Bacilli 1,827,111 1,717 Unpublished[1]
Lactococcus lactis IL1403 Bacilli 2,365,589 2,266 [67]
Listeria innocua Clip11262 Bacilli 3,011,208 2,981 [68]
Listeria monocytogenes EGD Bacilli 2,944,528 2,855 [68]
Listeria monocytogenes 4b Bacilli 2,905,187 2,821 [69]
Moorella thermoacetica ATCC39073 Clostridia 2,628,784 2,465 Unpublished[1]
Oceanobacillus iheyensis HTE831 Bacilli 3,630,528 3,496 [70]
Staphylococcus aureus COL Bacilli 2,809,422 2,673 [71]
Staphylococcus aureus MRSA252 Bacilli 2,902,619 2,744 [72]
Staphylococcus aureus MSSA476 Bacilli 2,799,802 2,619 [72]
Staphylococcus aureus Mu50 Bacilli 2,878,529 2,699 [73]
[Staphylococcus aureus]] MW2 Bacilli 2,820,462 2,632 [74]
Staphylococcus aureus N315 Bacilli 2,814,816 2,593 [73]
Staphylococcus aureus NCTC8325 Bacilli 2,821,361 2,892 Unpublished[1]
Staphylococcus aureus RF122 Bacilli 2,742,531 2,589 Unpublished[1]
Staphylococcus aureus USA300 Bacilli 2,872,769 2,560 [75]
Staphylococcus epidermidis ATCC12228 Bacilli 2,499,279 2,419 Unpublished[1]
Staphylococcus epidermidis RP62A Bacilli 2,616,530 2,494 [71]
Staphylococcus haemolyticus JCSC1435 Bacilli 2,685,015 2,678 [76]
Staphylococcus saprophyticus saprophyticus Bacilli 2,516,575 2,446 [77]
Streptococcus agalactiae A909 Bacilli 2,127,839 1,996 [78]
Streptococcus agalactiae NEM316 Bacilli 2,211,485 2,134 [79]
Streptococcus agalactiae 2603 V/R Bacilli 2,160,267 2,124 [80]
Streptococcus mutans UAB159 Bacilli 2,030,921 1,960 [81]
Streptococcus pneumoniae R6 Bacilli 2,038,615 2,043 [82]
Streptococcus pneumoniae TIGR4 Bacilli 2,160,842 2,125 [83]
Streptococcus pyogenes M5Manfredo Bacilli 1,841,271 Unpublished[1]
Streptococcus pyogenes MGAS10270 Bacilli 1,928,252 1,987 [84]
Streptococcus pyogenes MGAS10394 Bacilli 1,899,877 1,886 [85]
Streptococcus pyogenes MGAS10750 Bacilli 1,937,111 1,979 [84]
Streptococcus pyogenes MGAS2096 Bacilli 1,860,355 1,898 [84]
Streptococcus pyogenes MGAS315 Bacilli 1,900,521 1,865 [86]
Streptococcus pyogenes MGAS5005 Bacilli 1,838,554 1,865 [87]
Streptococcus pyogenes MGAS6180 Bacilli 1,897,573 1,894 [88]
Streptococcus pyogenes MGAS8232 Bacilli 1,895,017 1,845 [89]
Streptococcus pyogenes MGAS9429 Bacilli 1,836,467 1,877 [84]
Streptococcus pyogenes SF370 Bacilli 1,852,441 1,696 [90]
Streptococcus pyogenes SSI1 Bacilli 1,894,275 1,861 [91]
Streptococcus thermophilus CNRZ1066 Bacilli 1,796,226 1,915 [92]
Streptococcus thermophilus LMG18311 Bacilli 1,796,846 1,889 [92]
Thermoanaerobacter tengcongensis MB4T Clostridia 2,689,445 2,588 Unpublished[1]

Fusobacteria

Species Strain Type Base Pairs Genes Reference Genebank Identifier
Fusobacterium nucleatum ATCC25586 Fusobacteria 2,174,500 2,067 [93]
Fusobacterium sp. 11_3_2 Fusobacteria Unpublished ACUO00000000
Fusobacterium sp. 21_1A Fusobacteria Unpublished ADEE00000000

Gemmatimonadetes

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Nitrospirae

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Planctomycetes

Species Strain Type Base Pairs Genes Reference
Rhodopirellula baltica strain1 Planctomycetes Planctomycetacia 7,145,576 7,325 Unpublished[1]

Proteobacteria

Alphaproteobacteria

Species Strain Type Base Pairs Genes Reference
Agrobacterium tumefaciens C58 Alphaproteobacteria 2,841,581 2,722 [94]
Anaplasma marginale StMaries Alphaproteobacteria 1,197,687 949 [95]
Anaplasma phagocytophilum HZ Alphaproteobacteria 1,471,282 1,264 [96]
Bartonella henselae Houston-1 Alphaproteobacteria 1,931,047 1,612 [97]
Bartonella quintana Toulouse Alphaproteobacteria 1,581,384 1,308 [97]
Bradyrhizobium japonicum USDA110 Alphaproteobacteria 9,105,828 8,317 [98]
Brucella abortus 2308 (chromosome I) Alphaproteobacteria 1,156,948 1,164 [99]
2308 (chromosome II) Alphaproteobacteria 2,121,359 2,186 [99]
Brucella abortus 9-941 (chromosome I) Alphaproteobacteria 2,124,241 2,030 [100]
9-941 (chromosome II) Alphaproteobacteria 1,162,204 1,055 [100]
Brucella melitensis 16M (chromosome I) Alphaproteobacteria 2,117,144 2,059 [101]
16M (chromosome II) Alphaproteobacteria 1,177,787 1,139 [101]
Brucella suis 1330 (chromosome I) Alphaproteobacteria 2,107,794 2,123 [102]
1330 (chromosome II) Alphaproteobacteria 1,207,381 1,150 [102]
Caulobacter crescentus CB15 Alphaproteobacteria 4,016,947 3,737 [103]
Ehrlichia canis Jake Alphaproteobacteria 1,315,030 925 Unpublished[1]
Ehrlichia chaffeensis Arkansas Alphaproteobacteria 1,176,248 1,105 [96]
Ehrlichia ruminantium Gardel Alphaproteobacteria 1,499,920 950 Unpublished[1]
Ehrlichia ruminantium Welgevonden Alphaproteobacteria 1,512,977 958 Unpublished[1]
Unspecified Unspecified Alphaproteobacteria 1,516,355 920 [104]
Erythrobacter litoralis HTCC2594 Alphaproteobacteria 3,052,398 3,011 Unpublished[1]
Gluconobacter oxydans 621H Alphaproteobacteria 2,702,173 2,432 [105]
Jannaschia species CCS1 Alphaproteobacteria 4,317,977 4,212 Unpublished[1]
Magnetospirillum magneticum AMB1 Alphaproteobacteria 4,967,148 4,559 [106]
Mesorhizobium loti MAFF303099 Alphaproteobacteria 7,036,071 6,752 [107]
Neorickettsia sennetsu Miyayama Alphaproteobacteria 859,006 932 [96]
Nitrobacter hamburgensis X14 Alphaproteobacteria 4,406,967 3,804 Unpublished[1]
Nitrobacter winogradskyi Nb255 Alphaproteobacteria 3,402,093 3,122 Unpublished[1]
Novosphingobium aromaticivorans DSM12444 Alphaproteobacteria 3,561,584 3,324 Unpublished[1]
Pelagibacter ubique HTCC1062 Alphaproteobacteria 1,308,759 1,354 [108]
Rhizobium etli CFN42 Alphaproteobacteria 4,381,608 4,067 [109]
Rhizobium leguminosarum viciae3841 Alphaproteobacteria 7,751,309 4,746 Unpublished[1]
Rhodobacter sphaeroides 2.4.1 Alphaproteobacteria 3,188,609 3,022 Unpublished[1]
Unspecified Unspecified Alphaproteobacteria 943,016 835 Unpublished[1]
Rhodopseudomonas palustris BisB18 Alphaproteobacteria 5,513,844 4,886 Unpublished[1]
Rhodopseudomonas palustris BisB5 Alphaproteobacteria 4,892,717 4,397 Unpublished[1]
Rhodopseudomonas palustris CGA009 Alphaproteobacteria 5,459,213 4,833 [110]
Rhodopseudomonas palustris HaA2 Alphaproteobacteria 5,331,656 4,683 Unpublished[1]
Rhodospirillum rubrum ATCC11170 Alphaproteobacteria 4,352,825 3,791 Unpublished[1]
Rickettsia bellii RML369-C Alphaproteobacteria 1,522,076 1,429 Unpublished[1]
Rickettsia conorii Malish7 Alphaproteobacteria 1,268,755 1,374 [111]
Rickettsia felis URRWXCal2 Alphaproteobacteria 1,485,148 1,400 [112]
Rickettsia prowazekii Madrid-E Alphaproteobacteria 1,111,523 834 [113]
Rickettsia typhi Wilmington Alphaproteobacteria 1,111,496 838 [114]
Silicibacter pomeroyi DSS3 Alphaproteobacteria 4,109,442 3,810 [115]
Silicibacter species TM1040 Alphaproteobacteria 3,200,938 3,030 Unpublished[1]
Sinorhizobium medicae WSM419 Alphaproteobacteria 3,781,904 3,635 [116]
Sinorhizobium meliloti Rm1021 Alphaproteobacteria 3,654,135 3,341 [117]
Sphingopyxis alaskensis RB2256 Alphaproteobacteria 3,345,170 3,165 Unpublished[1]
Wolbachia endosymbiont TRS Alphaproteobacteria 1,080,084 805 [118]
Wolbachia pipientis wMel Alphaproteobacteria 1,267,782 1,195 [119]
Zymomonas mobilis ZM4 Alphaproteobacteria 2,056,416 1,998 [120]

Betaproteobacteria

Species Strain Type Base Pairs Genes Reference
Azoarcus sp. EbN1 Proteobacteria Betaproteobacteria 4,296,230 4,128 [121]
Bordetella bronchiseptica RB50 Proteobacteria Betaproteobacteria 5,339,179 5,006 Unpublished[1]
Bordetella parapertussis 12822 Proteobacteria Betaproteobacteria 4,773,551 4,402 Unpublished[1]
Bordetella pertussis TohamaI Proteobacteria Betaproteobacteria 4,086,189 3,806 Unpublished[1]
Burkholderia cenocepacia AU1054 Proteobacteria Betaproteobacteria 3,294,563 2,965 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,788,459 2,472 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 1,196,094 1,040 Unpublished[1]
Burkholderia mallei ATCC23344 Proteobacteria Betaproteobacteria 3,510,148 2,996 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,325,379 2,029 [122]
Burkholderia pseudomallei 1710b Proteobacteria Betaproteobacteria 4,126,292 3,736 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,181,762 2,611 Unpublished[1]
Burkholderia pseudomallei K96243 (chromosome I) Proteobacteria Betaproteobacteria 4,074,542 3,460 [72]
K96243 (chromosome II) Proteobacteria Betaproteobacteria 3,173,005 2,395 [72]
Burkholderia species 383 Proteobacteria Betaproteobacteria 3,694,126 3,334 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,587,082 3,174 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 1,395,069 1,209 Unpublished[1]
Burkholderia thailandensis E264 Proteobacteria Betaproteobacteria 3,809,201 3,276 [123]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,914,771 2,358 [123]
Burkholderia xenovorans LB400 Proteobacteria Betaproteobacteria 4,895,836 4,430 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 3,363,523 2,960 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 1,471,779 1,312 Unpublished[1]
Chromobacterium violaceum ATCC12472 Proteobacteria Betaproteobacteria 4,751,080 4,407 [124]
Dechloromonas aromatica RCB Proteobacteria Betaproteobacteria 4,501,104 4,171 Unpublished[1]
Methylobacillus flagellatus KT Proteobacteria Betaproteobacteria 2,971,517 2,753 Unpublished[1]
Neisseria gonorrhoeae FA1090 Proteobacteria Betaproteobacteria 2,153,922 2,002 Unpublished[1]
Neisseria meningitidis A Proteobacteria Betaproteobacteria 2,184,406 2,121 [125]
Neisseria meningitidis B Proteobacteria Betaproteobacteria 2,272,360 2,063 [126]
Nitrosomonas europaea Schmidt Proteobacteria Betaproteobacteria 2,812,094 2,574 [127]
Nitrosospira multiformis ATCC25196 Proteobacteria Betaproteobacteria 3,184,243 2,757 Unpublished[1]
Polaromonas species JS666 Proteobacteria Betaproteobacteria 5,200,264 4,817 Unpublished[1]
Ralstonia eutropha JMP134 Proteobacteria Betaproteobacteria 3,806,533 3,439 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,726,152 2,407 Unpublished[1]
Ralstonia metallidurans CH34 Proteobacteria Betaproteobacteria 3,928,089 3,601 Unpublished[1]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,580,084 2,313 Unpublished[1]
Ralstonia solanacearum GMI1000 Proteobacteria Betaproteobacteria 3,716,413 3,441 [128]
Unspecified Unspecified Proteobacteria Betaproteobacteria 2,094,509 1,679 [128]
Rhodoferax ferrireducens DSM15236 Proteobacteria Betaproteobacteria 4,712,337 4,170 Unpublished[1]
Thiobacillus denitrificans ATCC25259 Proteobacteria Betaproteobacteria 2,909,809 2,827 Unpublished[1]

Gammaproteobacteria

Species Strain Type Base Pairs Genes Reference
Acinetobacter sp. ADP1 Proteobacteria Gammaproteobacteria 3,598,621 3,325 [129]
Baumannia cicadellinicola Hc Proteobacteria Gammaproteobacteria 686,194 595 Unpublished[1]
Blochmannia floridanus Strain Proteobacteria Gammaproteobacteria 705,557 589 [130]
Blochmannia pennsylvanicus bpEN Proteobacteria Gammaproteobacteria 791,654 610 [131]
Buchnera aphidicola APS Proteobacteria Gammaproteobacteria 640,681 564 [132]
Buchnera aphidicola B Proteobacteria Gammaproteobacteria 615,980 504 [133]
Buchnera aphidicola Sg Proteobacteria Gammaproteobacteria 641,454 545 [134]
Carsonella ruddii PV Proteobacteria Gammaproteobacteria 159,662 182 [135]
Chromohalobacter salexigens DSM3043 Proteobacteria Gammaproteobacteria 3,696,649 3,298 Unpublished[1]
Colwellia psychrerythraea 34H Proteobacteria Gammaproteobacteria 5,373,180 4,910 Unpublished[1]
Coxiella burnetii RSA493 Proteobacteria Gammaproteobacteria 1,995,281 2,016 [136]
Erwinia carotovora SCRI1043 Proteobacteria Gammaproteobacteria 5,064,019 4,492 Unpublished[1]
Escherichia coli 536 Proteobacteria Gammaproteobacteria 4,938,920 4,685 Unpublished[1]
Escherichia coli CFT073 Proteobacteria Gammaproteobacteria 5,231,428 5,379 [137]
Escherichia coli K-12 Proteobacteria Gammaproteobacteria 4,639,675 4,331 [138]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 4,646,332 4,337 [139]
Escherichia coli O157:H7 Proteobacteria Gammaproteobacteria 5,528,445 5,349 [140]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 5,498,450 5,361 [141]
Escherichia coli UTI89 Proteobacteria Gammaproteobacteria 5,065,741 5,066 Unpublished[1]
Francisella tularensis LVS Proteobacteria Gammaproteobacteria 1,895,994 1,967 Unpublished[1]
Francisella tularensis SCHUS4 Proteobacteria Gammaproteobacteria 1,892,819 1,804 [142]
Haemophilus ducreyi 3500HP Proteobacteria Gammaproteobacteria 1,698,955 1,717 Unpublished[1]
Haemophilus influenzae 86-028NP Proteobacteria Gammaproteobacteria 1,913,428 1,792 [143]
Haemophilus influenzae Rd Proteobacteria Gammaproteobacteria 1,830,138 1,709 [144]
Hahella chejuensis KCTC2396 Proteobacteria Gammaproteobacteria 7,215,267 6,782 [145]
Idiomarina loihiensis L2TR Proteobacteria Gammaproteobacteria 2,839,318 2,628 [146]
Legionella pneumophila Lens Proteobacteria Gammaproteobacteria 3,345,687 2,947 [147]
Legionella pneumophila Paris Proteobacteria Gammaproteobacteria 3,503,610 3,082 [147]
Legionella pneumophila Philadelphia1 Proteobacteria Gammaproteobacteria 3,397,754 2,942 Unpublished[1]
Mannheimia succiniciproducens MBEL55E Proteobacteria Gammaproteobacteria 2,314,078 2,384 Unpublished[1]
Methylococcus capsulatus Bath Proteobacteria Gammaproteobacteria 3,304,561 2,960 [148]
Nitrosococcus oceani ATCC19707 Proteobacteria Gammaproteobacteria 3,481,691 2,976 Unpublished[1]
Pasteurella multocida Pm70 Proteobacteria Gammaproteobacteria 2,257,487 2,014 [149]
Photobacterium profundum SS9 Proteobacteria Gammaproteobacteria 4,085,304 3,416 Unpublished[1]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 2,237,943 1,997 Unpublished[1]
Photorhabdus luminescens laumondiiTTO1 Proteobacteria Gammaproteobacteria 5,688,987 4,905 Unpublished[1]
Pseudoalteromonas haloplanktis TAC125 Proteobacteria Gammaproteobacteria 3,214,944 2,941 [150]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 635,328 546 [150]
Pseudomonas aeruginosa PAO1 Proteobacteria Gammaproteobacteria 6,264,403 5,566 [151]
Pseudomonas entomophila L48 Proteobacteria Gammaproteobacteria 5,888,780 5,168 Unpublished[1]
Pseudomonas fluorescens Pf-5 Proteobacteria Gammaproteobacteria 7,074,893 6,137 [152]
Pseudomonas fluorescens PfO-1 Proteobacteria Gammaproteobacteria 6,438,405 5,736 Unpublished[1]
Pseudomonas putida KT2440 Proteobacteria Gammaproteobacteria 6,181,863 5,350 [153]
Pseudomonas syringae B728a Proteobacteria Gammaproteobacteria 6,093,698 5,136 [154]
Pseudomonas syringae DC3000 Proteobacteria Gammaproteobacteria 6,397,126 5,470 [155]
Pseudomonas syringae phaseolicola1448A Proteobacteria Gammaproteobacteria 5,928,787 4,983 Unpublished[1]
Psychrobacter arcticum 273-4 Proteobacteria Gammaproteobacteria 2,650,701 2,147 Unpublished[1]
Psychrobacter cryohalolentis K5 Proteobacteria Gammaproteobacteria 41,221 44 Unpublished[1]
Unspecified Unspecified Proteobacteria Gammaproteobacteria 3,059,876 2,467 Unpublished[1]
Saccharophagus degradans Feb-40 Proteobacteria Gammaproteobacteria 5,057,531 4,008 Unpublished[1]
Salmonella enterica ATCC9150 Proteobacteria Gammaproteobacteria 4,585,229 4,093 [156]
Salmonella enterica SCB67 Proteobacteria Gammaproteobacteria 4,755,700 4,445 [157]
Salmonella enterica Ty2 Proteobacteria Gammaproteobacteria 4,791,961 4,323 [158]
Salmonella enterica typhiCT18 Proteobacteria Gammaproteobacteria 4,809,037 4,600 [159]
Salmonella typhimurium LT2 Proteobacteria Gammaproteobacteria 4,857,432 4,452 [160]
Shewanella denitrificans OS217 Proteobacteria Gammaproteobacteria 4,545,906 3,754 Unpublished[1]
Shewanella oneidensis MR1 Proteobacteria Gammaproteobacteria 4,969,803 4,630 [161]
Shigella boydii Sb227 Proteobacteria Gammaproteobacteria 4,519,823 4,142 [162]
Shigella dysenteriae Sd197 Proteobacteria Gammaproteobacteria 4,369,232 4,277 [162]
Shigella flexneri 2457T Proteobacteria Gammaproteobacteria 4,599,354 4,073 [163]
Shigella flexneri 2a301 Proteobacteria Gammaproteobacteria 4,607,203 4,436 [164]
Shigella sonnei Ss046 Proteobacteria Gammaproteobacteria 4,825,265 4,224 [162]
Sodalis glossinidius morsitans Proteobacteria Gammaproteobacteria 4,171,146 2,432 [165]
Thiomicrospira crunogena XCL2 Proteobacteria Gammaproteobacteria 2,427,734 2,192 Unpublished[1]
Vibrio cholerae N16961 (chromosome I) Proteobacteria Gammaproteobacteria 2,961,149 2,736 [166]
N16961 (chromosome II) Proteobacteria Gammaproteobacteria 1,072,315 1,092 [166]
Vibrio fischeri ES114 (chromosome I) Proteobacteria Gammaproteobacteria 2,906,179 2,575 [167]
ES114 (chromosome II) Proteobacteria Gammaproteobacteria 1,332,022 1,172 [167]
Vibrio parahaemolyticus RIMD2210633 (chromosome I) Proteobacteria Gammaproteobacteria 3,288,558 3,080 [168]
RIMD2210633 (chromosome II) Proteobacteria Gammaproteobacteria 1,877,212 1,752 [168]
Vibrio vulnificus CMCP6 (chromosome I) Proteobacteria Gammaproteobacteria 3,281,944 2,973 [169]
CMCP6 (chromosome II) Proteobacteria Gammaproteobacteria 1,844,853 1,565 [169]
Vibrio vulnificus YJ016 (chromosome I) Proteobacteria Gammaproteobacteria 3,354,505 3,262 [170]
YJ016 (chromosome II) Proteobacteria Gammaproteobacteria 1,857,073 1,697 [170]
Wigglesworthia glossinidia Strain Proteobacteria Gammaproteobacteria 697,724 611 [171]
Xanthomonas axonopodis citri306 Proteobacteria Gammaproteobacteria 5,175,554 4,312 [172]
Xanthomonas campestris 8004 Proteobacteria Gammaproteobacteria 5,148,708 4,273 [173]
Xanthomonas campestris 8510 Proteobacteria Gammaproteobacteria 5,178,466 4,487 [174]
Xanthomonas campestris ATCC33913 Proteobacteria Gammaproteobacteria 5,076,188 4,181 [172]
Xanthomonas oryzae KACC10331 Proteobacteria Gammaproteobacteria 4,941,439 4,637 [175]
Xanthomonas oryzae MAFF311018 Proteobacteria Gammaproteobacteria 4,940,217 4,372 Unpublished[1]
Xylella fastidiosa 9a5c Proteobacteria Gammaproteobacteria 2,679,306 2,766 [176]
Xylella fastidiosa Temecula1 Proteobacteria Gammaproteobacteria 2,519,802 2,034 [177]
Yersinia pestis Antiqua Proteobacteria Gammaproteobacteria 4,702,289 4,167 [178]
Yersinia pestis CO-92BiovarOrientalis Proteobacteria Gammaproteobacteria 4,653,728 4,008 [179]
Yersinia pestis KIM Proteobacteria Gammaproteobacteria 4,600,755 4,090 [180]
Yersinia pestis Mediaevalis Proteobacteria Gammaproteobacteria 4,595,065 3,895 [181]
Yersinia pseudotuberculosis IP32953 Proteobacteria Gammaproteobacteria 4,744,671 3,974 [182]

Delta/epsilon subdivisions

Species Strain Type Base Pairs Genes Reference
Anaeromyxobacter dehalogenans 2CP-C Proteobacteria delta-epsilon 5,013,479 4,346 Unpublished[1]
Bdellovibrio bacteriovorus HD100 Proteobacteria delta-epsilon 3,782,950 3,583 [183]
Campylobacter jejuni NCTC11168 Proteobacteria delta-epsilon 1,641,481 1,643 [184]
Campylobacter jejuni RM1221 Proteobacteria delta-epsilon 1,777,831 1,838 [185]
Desulfotalea psychrophila LSv54 Proteobacteria delta-epsilon 3,523,383 3,118 Unpublished[1]
Desulfovibrio desulfuricans G20 Proteobacteria delta-epsilon 3,730,232 3,775 Unpublished[1]
Desulfovibrio vulgaris Hildenborough Proteobacteria delta-epsilon 3,570,858 3,379 [186]
Geobacter metallireducens GS15 Proteobacteria delta-epsilon 3,997,420 3,519 Unpublished[1]
Geobacter sulfurreducens PCA Proteobacteria delta-epsilon 3,814,139 3,447 [187]
Helicobacter hepaticus ATCC51449 Proteobacteria delta-epsilon 1,799,146 1,875 [188]
Helicobacter pylori 26695 Proteobacteria delta-epsilon 1,667,867 1,566 [189]
Helicobacter pylori HPAG1 Proteobacteria delta-epsilon 1,596,366 1,536 Unpublished[1]
Helicobacter pylori J99 Proteobacteria delta-epsilon 1,643,831 1,491 [190]
Lawsonia intracellularis PHEMN1-00 Proteobacteria delta-epsilon 1,719,014 1,344 Unpublished[1]
Unspecified Unspecified Proteobacteria delta-epsilon 39,794 24 Unpublished[1]
Unspecified Unspecified Proteobacteria delta-epsilon 194,553 104 Unpublished[1]
Unspecified Unspecified Proteobacteria delta-epsilon 1,457,619 1,187 Unpublished[1]
Myxococcus xanthus DK1622 Proteobacteria delta-epsilon 9,139,763 7,331 Unpublished[1]
Pelobacter carbinolicus DSM2380 Proteobacteria delta-epsilon 3,665,893 3,119 Unpublished[1]
Syntrophus aciditrophicus SB Proteobacteria delta-epsilon 3,179,300 3,168 Unpublished[1]
Thiomicrospira denitrificans ATCC33889 Proteobacteria delta-epsilon 2,201,561 2,097 Unpublished[1]
Wolinella succino DSMZ1740 Proteobacteria delta-epsilon 2,110,355 2,044 [191]

Zetaproteobacteria

Spirochaetes

Species Strain Type Base Pairs Genes Reference
Borrelia burgdorferi B31 Spirochaetes 910,724 850 [192]
Borrelia garinii PBi Spirochaetes 904,246 832 [193]
Leptospira interrogans 56601 Spirochaetes 4,332,241 4,358 [194]
Unspecified Unspecified Spirochaetes 358,943 367 [194]
Leptospira interrogans FiocruzL1130 Spirochaetes 4,277,185 3,394 [195]
Unspecified Unspecified Spirochaetes 350,181 264 [195]
Treponema denticola ATCC35405 Spirochaetes 2,843,201 2,767 [196]
Treponema pallidum Nichols Spirochaetes 1,138,011 1,031 [197]

Synergistetes

Species Strain Type Base Pairs Genes Reference GeneBank Identifier
Thermovirga lienii Cas60314, DSM 17291 Synergistia 1,967,774 DOE Joint Genome Institute CP003096

Tenericutes

Species Strain Type Base Pairs Genes Reference GeneBank Identifier
Mesoplasma florum L1 Mollicutes 793,224 683 Unpublished[1]
Mycoplasma capricolum ATCC273 Mollicutes 1,010,023 812 Unpublished[1]
Mycoplasma anatis 1340, ATCC 25524 Mollicutes [198] AFVJ00000000
Mycoplasma capricolum ATCC273 Mollicutes 1,010,023 812 Unpublished[1]
Mycoplasma gallisepticum R Mollicutes 996,422 726 [199]
Mycoplasma genitalium G37 Mollicutes 580,076 476 [200]
Mycoplasma haemocanis Illinois Mollicutes 919,992 Unpublished CP003199
Mycoplasma hyopneumoniae 232 Mollicutes 892,758 691 [201]
Mycoplasma hyopneumoniae 7448 Mollicutes 920,079 663 [202]
Mycoplasma hyopneumoniae J Mollicutes 897,405 665 [202]
Mycoplasma hyorhinis GDL-1 Mollicutes 837,480 Unpublished CP003231
Mycoplasma leachii 99/014/6 Mollicutes 1,017,232 Unpublished FR668087
Mycoplasma mobile 163K Mollicutes 777,079 635 [203]
Mycoplasma mycoides SC Mollicutes 1,211,703 1,016 [204]
Mycoplasma penetrans HF2 Mollicutes 1,358,633 1,037 [205]
Mycoplasma pneumoniae M129 Mollicutes 816,394 688 [206]
Mycoplasma pulmonis UAB Mollicutes 963,879 782 [207]
Mycoplasma synoviae 53 Mollicutes 799,476 672 [202]
Phytoplas maasteris AYWB Mollicutes 706,569 671 Unpublished[1]
Phytoplas maasteris OY Mollicutes 860,631 754 [208]
Ureaplasma urealyticum serovar3 Mollicutes 751,719 611 [209]

Thermodesulfobacteria

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Thermotogae

Species Strain Type Base Pairs Genes Reference
Thermotoga maritima MSB8 Thermotogae 1,860,725 1,846 [210]

See also

References

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