Microarray

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A semiconductor device that is used to detect the DNA makeup of a human cell. DNA chains comprise molecules that pair with each other, and micro arrays contain millions of DNA strands designed to mate with their other half as the liquefied human cells are poured over them. This "hybridization" process is then detectable by a laser.

Micro arrays are revolutionizing medicine by being able to pinpoint a very specific disease or the susceptibility to it. Sometimes called "biochips," Affymetrix (www.affymetrix.com) pioneered this technology with its GeneChip family. See Human Genome Project.

Micro Array Features
The square locations on this Affymetrix array are called "features," and each feature holds millions of identical DNA strands called "probes." The probes are built like semiconductor chips, one layer at a time. (Image courtesy of Affymetrix.)

Hybridization (Pairing)
The human DNA sample, which has been replicated millions of times and fragmented into short pieces, is washed over the micro array. The red balls depict biotin molecules that were adhered to the fragments, which "swim" around the probes for up to 16 hours. During that time, some strands will pair with the probes (the hybridization process). (Image courtesy of Affymetrix.)

Detection
The array is rinsed and washed with a fluorescent stain that clings to the biotin on the strands of the human sample that remain. A laser causes them to glow, and the DNA is analyzed (genotyped) based on which probes on the array they mated with. (Images courtesy of Affymetrix.)

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What is a microarray?

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A microarray is a technique in which PCR-amplified DNA fragments are placed on a thin glass or silicon plate by cross-linking the DNA to the glass or silicon. Fluorescent dye-labeled mRNA or complementary DNA is then hybridized to the sample. When hybridization occurs, a specific fluorescent color is produced. For example, if two samples, one labeled with a red dye and one with a green dye, are both hybridized to the same DNA sequence on the microarray, a yellow color is produced. The amount of color produced also allows scientists to detect the level of gene expression.

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or DNA chip or DNA microarray or gene expression array

a glass slide or bead whose surface bears numerous microscopic samples of DNA or other reagent in an orderly pattern. Microarrays are most commonly used for the simultaneous measurement of the expression levels of large numbers of genes. For example, entire cloned cDNA sequences or oligonucleotides can be bound to the slide, either by means of a robotic spotter or by direct synthesis on the array. A single slide may contain tens of thousands of spots, or addresses, each containing a copy of a specific DNA sequence. cDNA samples that have been reverse transcribed from a cellular RNA extract are then fluorescently labelled and hybridized to the array. The array is scanned with a fluorescent scanner, and the data collected and automatically analysed to quantify the relative amount of fluorescence and hence the relative levels of expression of each gene. See also GeneChip array.

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A microarray is a multiplex lab-on-a-chip. It is a 2D array on a solid substrate (usually a glass slide or silicon thin-film cell) that assays large amounts of biological material using high-throughput screening methods.

Types of microarrays include:


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