In short, yes, your menstrual cycle is messed up.
Hormonal birth control suppresses your menstrual cycles so that you no longer ovulate, and thus in turn you also don't menstruate either - bleeding you get on the pill is a withdrawal bleed caused by the drop in synthetic hormones when you go into your placebo week. Coming off the pill it takes time for your menstrual cycles to reestablish themselves, you should menstruate within three months but don't be surprised if your cycles are irregular for up to twelve months after stopping hormonal birth control. If still worried about pregnancy then go talk to your doctor to make sure that everything is okay, and maybe look at getting another form of birth control.
GO TO THE DOCTOR!
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