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Yes, you can eat most diseased plants safely be it cooked or uncooked because the pathogens infecting the plants cannot infect you. There are very few pathogens which are considered "opportunistic pathogens" who will infect both people and plants.

That being said, a diseased plant may not be edible in terms of flavor or texture so if possible it is usually just preferred to eat healthy produce. A surface infection like flyspeck or sooty blotch on an apple for example will not bother you.

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