you have to go to the surrounded sea and when you get to the end you will find 2 deluxe boxes and an egg. take the egg and you will get manaphy! After you defeat darkrai do a few missions(manaphy won't come back if you don't do missions) the chatot will tell you that manaphy came back and manaphy will ask to join your team.
When you graduate, do a job or two. Then, MR MIME should be next to KECLEON Market. Talk to him to unlock Blizzard Island. There are 20 floors. Then you unlock Crevice Cave. There are 10 floors. Then you have to fight FROSSLASS. He is quite easy ( as easy as MESPRIT was when you first found his underground lake ). Then SCIZOR is free. The next day ( on the game ) talk to SUNFLORA, your Guild friend. That should unlock Bottomless/Surrounded Sea. ( I don't know which one - I have fully finished the game which is a long way away from this stage. ) When you reach the final floor, you should find an egg. Inside is a level 1 MANAPHY. Hope I helped!
After you have beaten Darkari if you wait about 3 to 10 days Chatot will come and wake you up in the morning.He will tell you that Manaphy has returned. Manaphy then asks if it can join your team. If it were my choice I would take Manaphy!
after saving scizor youll be able to go to miracle sea. there youll find a manaphy egg. take care of it and it will leave wait awhile and it will come back and join your team at lv40.
after setting manaphy free, complete the following events and beating Darkrai, Manaphy will return.
Manaphy isn't in this game he's in mystery dungeon explorers of Time & darkness or Sky
Surrounded Sea
you go to surrounded sea and complete the dungeon and find an egg.at home it hatches and becomes manaphy.
I don't think there is a Manaphy on Blue Rescue Team.
evolve all of your pokemon,recruit all the legendary pokemon.
craggy coast
-Mongmong908♥♥
not much happens, go on a few missions, and manaphy will return to you
Do the usual of carrying out missions for a few days. Manaphy will come back.
You have to be defeated in a dungeon.
Show it to Chatot in the guild.