http://football.stassen.com/cgi-bin/records/calc-wp.pl?start=1869&end=2007&rpct=30&min=5&se=on&by=Win+Pct
The University of Michigan is the most winningest football program in the history of the NCAA.
Tubby Smith
Bob Knight with 902 wins.
Duke
Notre Dame combined football and basketball and I believe Syracuse is 2nd.
Florida, Michigan
Pat Summitt is the all-time winningest coach in NCAA basketball history, men or women, in any division.
notre dame
three
football- LSU Basketball- Kansas
Alabama
The Alabama Crimson Tide have won the most NCAA Football Titles The UCLA Bruins have won the most NCAA Basketball Titles The USC Trojans have won the most NCAA Baseball Titles In Women's NCAA Basketball the Connecticut Lady Huskies have the most NCAA Basketball Titles