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It depends on the primary sequence of amino acids as to which secondary structure is more stable. Both structures use hydrogen bonds to stabilize the structures, however in an alpha helix, these hydrogen bonds are with the peptide and in beta sheets the hydrogen bonds are between beta peptide strands.

I really don't know which structure is more stable...

-alpha helix seems to be a more common structure

-and B sheets lose some H bonding during hair pin turns and during twists.

-But an alpha helix has a dipole whereas an antiparalle beta sheet doesnt.

-weighing it up i would assume an alpha helix to be more stable but that would be a guess from me.

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Q: What level of protein structure is associated the alpha helix and beta pleated sheet?
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