Because you have to follow the storyline. Now, If you had an AR with a code that lets you walk through walls...
They are in their bases. magmas is on the way down mt.chimney. And aquas is in the cave near lilycove city. To open up magmas base you have to go to the top of mt.pyre where you will have to battle team aquas goons .Once they have gone talk to the old man if he doesn't give you a magma embelem talk to the old lady Once you have that go down mt.chimney and the screen will shake and it will say somthing. you should see a cave if you go into it this is magmas base. once you complete that go to lilycove city and surf to aquas base.
Go to aquas base in Lilycove
You have to beat team aquas leader. His red orb will glow and kyogre will wake up.
fid team aquas hide out and you will get 1
you go to the team aquas hideout near lillycove city
A rock in the front is a good hideout to pass em
go to the jagged pass and it should still be there
you must see team magmas and aquas plan fail with kyorg and groudon then talk to Steven and he will ask you were you think rayquaza is answer sky pillar.
Im not exactly sure but i think you find team aquas and magmas sub by using dive then you have to go in the cave and battle Archie and maxie. Then rayquaza will fly away. Get to sootopolis and go to the origin cave get to the end and battle/catch raquaza.
beat the team aqua base
if you have emerald and Sapphire it is going to be in team aquas hide out there will be four pokeballs the masterball is in the left corner it will be by two electrodes and one nugget
You must get the badge from your dad and when you do you get the HM surf and teach it to a Pokemon that knows how to do it. go to Lilcove and go all the way to the upper right and surf and you'll see a cave and that is Team aquas hideout!Welcome,Qajs1 (Quinton)