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In there is a type of extremophile living in the gas tank of the jet aircraft, my first thought would be to add an alcohol based fuel additive which may potentially kill off that particular microorganism. Modifying the pH within the fuel tank might also curb the microbe growth (but might also further degrade the fuel tank).

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Q: What actions may be taken to protect jet aircraft's integral fuel tanks from corrosion due to microbial growth within the tank?
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