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peptide

  (pĕp'tīd') pronunciation
n.

Any of various natural or synthetic compounds containing two or more amino acids linked by the carboxyl group of one amino acid to the amino group of another.

[PEPT(ONE) + –IDE.]

peptidic pep·tid'ic (-tĭd'ĭk) adj.
peptidically pep·tid'i·cal·ly adv.
 
 

A compound that is made up of two or more amino acids joined by covalent bonds which are formed by the elimination of a molecule of H2O from the amino group of one amino acid and the carboxyl group of the next amino acid. Peptides larger than about 50 amino acid residues are usually classified as proteins. Glutathione is the most abundant peptide in mammalian tissue. Hormones such as oxytocin (8), vasopressin (8), glucagon (29), and adrenocorticotropic hormone (39) are peptides whose structures have been deduced; in parentheses are the numbers of amino acid residues for each peptide.

For each step in the biological synthesis of a peptide or protein there is a specific enzyme or enzyme complex that catalyzes each reaction in an ordered fashion along the biosynthetic route. However, it is noteworthy that, although the biological synthesis of proteins is directed by messenger RNA on cellular structures called ribosomes, the biological synthesis of peptides does not require either messenger RNA or ribosomes. See also Amino acids; Protein.


 

Peptides are short chains of amino acids linked together. If there are only two amino acids then the peptide is a dipeptide. Similarly there are tripeptides, tetrapeptides, and so on. If the number of amino acids in the chain reaches around ten or so, such substances are called polypeptides, while large polypeptides are called proteins. There is no particular agreed size at which a large polypeptide becomes a small protein, but generally polypeptides have molecular weights of a few thousand, while proteins have molecular weights of tens of thousands. Depending on which amino acids are involved, between seven and ten amino acids will add about 1000 to the molecular weight.

Protein molecules in the diet are digested by enzymes (which are themselves specialized proteins), that break them down into smaller and smaller lengths, the breakage occurring at the peptide bonds. Peptides and amino acids are thus the final cleavage products of protein digestion. Amino acids are the main protein breakdown product absorbed from the gut, but some di- and tri-peptides are also absorbed, there being specific carrier systems in the cells lining the small intestine to transport these small peptides from the lumen to the blood.

The dipeptide carnosine, formed from the amino acids alanine and histidine, was identified in muscle a century ago, but only recently has research revealed its properties and the likely variety and significance of its functions. It is known to be present also in the brain, where it may act as a neurotransmitter. In muscle it is likely to be important in making the contractile filaments more sensitive to calcium ions and in controlling the internal acidity of these fibres. It has been suggested that it may also be a scavenger of free radicals. Its strong binding with zinc may be important in co-absorption from the gut of this essential trace element; and physiologically significant interactions between carnosine, zinc, and histamine are being discovered.

The tripeptide glutathione (glutamic acid-cysteine-glycine) is an important co-factor for many enzymes, increasing their activity.

Polypeptide hormones

Polypeptides control or trigger a great many bodily functions, acting close to or at a distance from the site at which they are produced and released. The table below gives a few examples, giving the site of production, the number of amino acids, and an indication of the functions that the polypeptides promote.

Amino acidsOriginAction
Hormones
Oxytocin9Posterior pituitaryUterine contraction and milk ejection
Vasopressin9Posterior pituitaryAntidiuretic (water-retaining) action in
kidneys
Glucagon29Endocrine pancreasIncreases blood sugar
ACTH39Anterior pituitaryStimulates release of cortisol from adrenal
glands
Gastrin17Stomach liningStimulates gastric acid secretion
Angiotensin8From precursor inRegulation of body fluid volume and
the bloodcirculation
Local agents
Bradykinin9In tissuesDilates blood vessels, stimulates secretions
Endothelin21EndotheliumConstricts blood vessels
Neuropeptides/hormones
CRF41Hypothalamus andPromotes release of pituitary and other
many other brainhormones, and stimulates sympathetic
regionsnervous activity
Substance P11Nervous system, gut, Vasodilator; neurotransmitter involved in
inflamed tissuepain sensation
CCK33Duodenal lining;As hormone, stimulates gall bladder
peripheral nerves andcontraction and pancreatic secretion;
many brain regionsneurotransmitter in brain


Proteins usually fold to form particular three-dimensional shapes (which determine their actions), but polypeptides are not so structurally constrained, so in solution they can adopt many conformations. For example, oxytocin and vasopressin have about a thousand different conformations in solution, all in dynamic equilibrium one with another. How is it therefore that they specifically attach to their receptors, with the requirements for specific shape and charge distribution? The answer is that some part of the polypeptide attaches to the receptor, while adjacent parts turn and rotate until the correct shape is reached. Thus the polypeptides use a ‘zipper’ mechanism to attach to membrane receptors.

Neuropeptides

There are many different peptides in neurons, released along with other neurotransmitters. Some peptides that were originally identified as hormones, thought to be produced at one particular site and to act at certain ‘target’ sites, have more recently been found to be made elsewhere also, and to have other functions. The body utilizes the same peptide for different purposes. This is true, for example, of cholecystokinin (CCK), a 33-amino-acid polypeptide that was known for many decades as a hormone that originated in the duodenum and caused emptying of the gall bladder. Since the 1980s it has been revealed to be a modulator of neural activity, produced by many nerve cells, widespread in the nervous system. Likewise, corticotrophin releasing factor (CRF), with 41 amino acids, was originally known to be made and released by a group of neurons in the hypothalamus, passing to the pituitary gland and there stimulating the secretion of ACTH (adrenocorticotrophic hormone). But it too has been found to be a neuromodulator produced by neurons in many parts of the brain.

A family of peptides called opioid peptides or endorphins, found in the brain and elsewhere in the body, are responsible for the modulation of pain sensation. One group of these, the pentapeptide enkephalins, are released as neurotransmitters by nerve cells in certain parts of the brain and spinal cord. They bind to opiate receptors (the membrane receptors on which opiate drugs act) on other nerve cells in the pathways that mediate pain, hence acting as ‘endogenous’ (internally generated) analgesics.

— Alan W. Cuthbert, Sheila Jennett

See also amino acids; hormones; opiates; opioids; pain; proteins.

 

Compounds formed when amino acids are linked together through the —CO—NH— (peptide) linkage. Two amino acids so linked form a dipeptide, three a tripeptide, etc.; medium-length chains of amino acids (four up to about 50) are known as oligopeptides, longer chains are polypeptides or proteins.

 

n

A compound of two or more amino acids in which the α-carboxyl group of one is united with the α-amino group of another, with the elimination of a molecule of water, creating a peptide bond CO—NH—.

 

Organic compound composed of a series of amino acids linked by peptide bonds (see covalent bond) between a carbon atom of one and a nitrogen atom of the next. Peptide chains longer than a few dozen amino acids are called proteins. Biosynthesis of peptides from a succession of amino acids carried by transfer RNA molecules takes place on ribosomes and is catalyzed and controlled by enzymes. Many hormones, antibiotics, and other compounds that participate in life processes are peptides.

For more information on peptide, visit Britannica.com.

 
organic compound composed of amino acids linked together chemically by peptide bonds. The peptide bond always involves a single covalent link between the α-carboxyl (oxygen-bearing carbon) of one amino acid and the amino nitrogen of a second amino acid. In the formation of a peptide bond from two amino acids, a molecule of water is eliminated. Small peptides with fewer than about ten constituent amino acids are called oligopeptides, and peptides with more than ten amino acids are termed polypeptides. Compounds with molecular weights of more than 10,000 (50–100 amino acids) are usually termed proteins. Organisms commonly contain appreciable quantities of low-molecular-weight peptides some arising from proteins while others are synthesized directly. Certain of these molecules are unusual in that they incorporate amino acids not found in proteins such as amino acids of the D-configuration. Among the biological peptides are many with physiological or antibacterial activity, such as the peptide hormones oxytocin and vasopressin; adrenocorticotropic hormone (ACTH), secreted by the pituitary gland; and several cyclic peptides, in which the amino-acid sequence forms a ring structure rather than a straight chain, such as the antibiotics tyrocidin and gramicidin. Laboratory synthesis of peptides has risen to the level of a well-defined art in recent years. Synthetic peptides, composed of as many as a hundred amino acids in specified sequence, have been prepared in the laboratory with good purity and high yields.


 

Any of a class of compounds of low molecular weight which yield two or more amino acids on hydrolysis; known as di-, tri-, tetra- etc. peptides, depending on the number of amino acids in the molecule. Peptides form the constituent parts of proteins. See also polypeptide.

  • leader p. — a step in the signal hypothesis advanced to explain the mechanisms governing the fate of newly formed polypeptides or secretory proteins.
  • p. map — a pattern of peptide fragments, characteristic of a particular protein. Produced by using either proteolytic enzymes such as trypsin or chemicals such as cyanogen bromide to cut proteins at a relatively small number of particular sites, the peptide fragments are then separated by chromatographic or electrophoretic procedures. Called also fingerprint.
  • p.-para-aminobenzoic acid test — see bt-paba test.
 
Wikipedia: peptide

Peptides (from the Greek πεπτίδια, "small digestibles") are short polymers formed from the linking, in a defined order, of α-amino acids. The link between one amino acid residue and the next is known as an amide bond or a peptide bond.

Proteins are polypeptide molecules (or consist of multiple polypeptide subunits). The distinction is that peptides are short and polypeptides/proteins are long. There are several different conventions to determine these, all of which have flaws.

Conventions

One convention is that those peptide chains that are short enough to be made synthetically from the constituent amino acids are called peptides rather than proteins. However, with the advent of better synthetic techniques, peptides as long as hundreds of amino acids can be made, including full proteins like ubiquitin. Native chemical ligation has given access to even longer proteins, so this convention seems to be outdated.

Another convention places an informal dividing line at approximately 50 amino acids in length (some people claim shorter lengths). However, this definition is somewhat arbitrary. Long peptides, such as the amyloid beta peptide linked to Alzheimer's disease, can be considered proteins; and small proteins, such as insulin, can be considered peptides.

Peptide classes

Here are the major classes of peptides, according to how they are produced:

Ribosomal peptides 
Are synthesized by translation of mRNA. They are often subjected to proteolysis to generate the mature form. These function, typically in higher organisms, as hormones and signaling molecules. Some lower organisms produce peptides as antibiotics, such as microcins.[1] Since they are translated, the amino acid residues involved are restricted to those utilized by the ribosome. However, these peptides frequently have posttranslational modifications, such as phosphorylation, hydroxylation, sulfonation, palmitylation, glycosylation and disulfide formation. In general, they are linear, although lariat structures have been observed.[2] More exotic manipulations do occur, such as racemization of L-amino acids to D-amino acids in platypus venom.[3]
Nonribosomal peptides 
These peptides are assembled by enzymes that are specific to each peptide, rather than by the ribosome. The most common non-ribosomal peptide is glutathione, which is a component of the antioxidant defenses of most aerobic organisms.[4] Other nonribosomal peptides are most common in unicellular organisms, plants, and fungi and are synthesized by modular enzyme complexes called nonribosomal peptide synthetases.[5] These complexes are often laid out in a similar fashion, and they can contain many different modules to perform a diverse set of chemical manipulations on the developing product.[6] These peptides are often cyclic and can have highly-complex cyclic structures, although linear nonribosomal peptides are also common. Since the system is closely related to the machinery for building fatty acids and polyketides, hybrid compounds are often found. Oxazoles, thiazoles often indicate that the compound was synthesized in this fashion.[7]
Peptones 
Are derived from animal meat digested by proteolases. The resulting material is used as a source of proteins in nutrient media for growing bacteria and fungi.[8]
Peptide Fragments 
Refer to fragments of proteins which used to identify or quantify the source protein.[9] Often these are the products of enzymatic degradation performed in the laboratory on a controlled sample, but can also be forensic or paleontological samples which have been degraded by natural effects.[10][11]

Peptides in molecular biology

Peptides have received prominence in molecular biology in recent times for several reasons. The first and most important is that peptides allow the creation of peptide antibodies in animals without the need to purify the protein of interest.[12] This involves synthesizing antigenic peptides of sections of the protein of interest. These will then be used to make antibodies in a rabbit or mouse against the protein.

Another reason is that peptides have become instrumental in mass spectrometry, allowing the identification of proteins of interest based on peptide masses and sequence.

Peptides have recently been used in the study of protein structure and function. For example, synthetic peptides can be used as probes to see where protein-peptide interactions occur.

Inhibitory peptides are also used in clinical research to examine the effects of peptides on the inhibition of cancer proteins and other diseases.

Well-known peptide families in humans

The peptide families in this section are all ribosomal peptides, usually with hormonal activity. All of these peptides are synthesized by cells as longer "propeptides" or "proproteins" and truncated prior to exiting the cell. They are released into the bloodstream where they perform their signalling functions.

The Tachykinin peptides

Vasoactive intestinal peptides

Pancreatic polypeptide-related peptides

Opioid peptides

Calcitonin peptides

Notes on terminology

  • A polypeptide is a single linear chain of amino acids.
  • A protein are one or more polypeptides more than about 50 amino acids long.
  • An oligopeptide or (simply) a peptide is a polypeptide less than 30-50 amino acids long.
  • A dipeptide has two amino acids.
  • A tripeptide has three amino acids.
  • A pentapeptide has five amino acids.
  • A nonapeptide has nine amino acids (e.g., oxytocin).
  • A neuropeptide is a peptide that is active in association with neural tissue.
  • A peptide hormone is a peptide that acts as a hormone.

See also

References

  1. ^ Duquesne S, Destoumieux-Garzón D, Peduzzi J, Rebuffat S (2007). "Microcins, gene-encoded antibacterial peptides from enterobacteria". Natural product reports 24 (4): 708–34. PMID 17653356. 
  2. ^ Pons M, Feliz M, Antònia Molins M, Giralt E (1991). "Conformational analysis of bacitracin A, a naturally occurring lariat". Biopolymers 31 (6): 605–12. PMID 1932561. 
  3. ^ Torres AM, Menz I, Alewood PF, et al (2002). "D-Amino acid residue in the C-type natriuretic peptide from the venom of the mammal, Ornithorhynchus anatinus, the Australian platypus". FEBS Lett. 524 (1-3): 172–6. PMID 12135762. 
  4. ^ Meister A, Anderson M (1983). "Glutathione". Annu Rev Biochem 52: 711 – 60. PMID 6137189. 
  5. ^ Hahn M, Stachelhaus T (2004). "Selective interaction between nonribosomal peptide synthetases is facilitated by short communication-mediating domains". Proc. Natl. Acad. Sci. U.S.A. 101 (44): 15585–90. PMID 15498872. 
  6. ^ Finking R, Marahiel MA (2004). "Biosynthesis of nonribosomal peptides1". Annu. Rev. Microbiol. 58: 453–88. PMID 15487945. 
  7. ^ Du L, Shen B (2001). "Biosynthesis of hybrid peptide-polyketide natural products". Current opinion in drug discovery & development 4 (2): 215–28. PMID 11378961. 
  8. ^ Payne JW (1976). "Peptides and micro-organisms". Adv. Microb. Physiol. 13: 55–113. PMID 775944. 
  9. ^ Hummel J, Niemann M, Wienkoop S, et al (2007). "ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites". BMC Bioinformatics 8: 216. PMID 17587460. 
  10. ^ Webster J, Oxley D (2005). "Peptide mass fingerprinting: protein identification using MALDI-TOF mass spectrometry". Methods Mol. Biol. 310: 227–40. PMID 16350956. 
  11. ^ Marquet P, Lachâtre G (1999). "Liquid chromatography-mass spectrometry: potential in forensic and clinical toxicology". J. Chromatogr. B Biomed. Sci. Appl. 733 (1-2): 93–118. PMID 10572976. 
  12. ^ Bulinski JC (1986). "Peptide antibodies: new tools for cell biology". Int. Rev. Cytol. 103: 281–302. PMID 2427468. 



Major families of biochemicals
Peptides | Amino acids | Nucleic acids | Carbohydrates | Lipids | Terpenes | Carotenoids | Tetrapyrroles | Enzyme cofactors | Steroids | Flavonoids | Alkaloids | Polyketides | Glycosides
Analogues of nucleic acids: Types of Peptides Analogues of nucleic acids:
General: Genetic code | Protein | Dipeptide | Tripeptide | Tetrapeptide
Oxytocin | Vasopressin
Calcitonin | Amylin
HPP | NPY | PYY
Glucagon | Secretin | VIP
Substance P | Kassinin | Eledoisin
Bradykinin | Adrenocorticotrophic hormone
MSHs: Proopiomelanocortin | Melanotan
Others: Endorphin | Lipotropin | Glutathione | Thyrotropin-releasing hormone
Carnosine | Anserine | Kyotorphin
Tentoxin | Tuftsin | Corticotropin-releasing hormone

 
 

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