Hi,
I assume you mean gel electrophoresis of proteins (commonly done
in a polyacrylamide gel e.g. SDS-PAGE) or agarose gel
electrophoresis of DNA.
Generally, as electrophoresis is allowed to proceed for a long
time, the gel and the buffer in which it is submerged in becomes
heated (due to Joule heating effects of the current supply). The
heating causes the pores in the gel matrix to lose their definition
(due to flaccidness induced upon the polyacrylamide / agarose
matrix strands within the gel) and the sample molecules (being
electrophoresed) can now easily 'force' their way through the
meshwork of fibres within the gel, thus creating an illusionary
aspect of 'enhanced rate of migration' (i.e. 'increased rate of
electrophoresis').
Hope this answers your query.
Thanks and Regards,
Shiraz