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Rabbits take over the bilby's habitat by eating the native vegetation which forms part of the bilby's diet. Bilbies feed on tubers, among other things, and because rabbits eat almost any vegetation, they eat the part of the tuber above the ground, and this kills the plant. Rabbits also dig shallow burrows in the ground. These destabilise the soil, meaning that the burrows cave in on the bilbies' burrows below, often causing the bilbies to suffocate.

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