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Articuno - Frosty Forest after defeating Rayquaza

Zapdos - Mt Thunder after defeating Rayquaza

Moltres - Mt Blaze after defeating Rayquaza

Mewtwo - Western Cave 99F, will recruit after 2nd defeat

Mew - Buried Relic - Appears while holding Music Box on 36-99F

Raikou - Lightning Field 30F, Can't recruit 1st try

Entei - Firey Field 30F, Can't recruit 1st try

Suicune - Northwind Field 30F, Can't recruit 1st try

Lugia - Silver Trench 99F, CAN recruit 1st try

Ho-oh - Mt. Faraway 40F, Can't recruit 1st try

Celebi - Purity Forest 99F, You don't have to fight, it just asks

Regirock - Buried Relic 15F, need Rock part or Music Box

Regice - Buried Relic 25F, need Ice part or Music Box

Registeel - Buried Relic 35F, need Steel part or Music Box

Latias - Asks to recruit after you rescue her from Pitfall Valley

Latios - Asks to recruit after you rescue Latias from Pitfall Valley

Kyogre - Stormy Sea 40F, CAN be recruited first try

Groudon - Magma Cavern 3P after defeating Rayquaza (Really rare to recruit)

Rayquaza - Sky Tower Summit 9F, need Fly, (Really rare to recruit)

Jirachi - Wish Cave 99F, If you have the Wish Stone, it will give you a wish, and if you don't make one, it will ask to join your team

Deoxys - Meteor Cave 20F, changes forme randomly every floor

Make sure you have their friend areas first!!!!

Hope this helps

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