The past perfect tense is had run.
The past perfect tense of hope is had hoped.
The past tense of ran is ran. The future is run. The present is running. Had Run, had ran.
"Had been" is the past perfect tense of be.
The past perfect tense is had borne.
The past perfect tense is had broken.
past: ran past perfect: had run past progressive: was/were running past perfect progressive: had been running
The past tense is 'ran'. The past participle is 'run', so the past perfect (pluperfect) tense is 'had run'. 'I ran three miles yesterday.' 'I had run twenty miles over the previous week.' 'I ran that training course last year.' 'The course had been run many times before.' (this is passive past perfect). Jack had run the course many times. (active past perfect) NEVER 'have ran' or 'had ran'. Those constructions do not exist in English.
"Will be run": the verb "run" is its own past participle.
The past tense of "exist" is "existed." The past perfect tense is "had existed."
The past tense of "bleed" is "bled." The past perfect tense of "bleed" is "had bled."
The past perfect tense of hope is had hoped.
The past perfect tense of "submit" is "had submitted."
The past tense of stand is stood. Ran is already in the past tense. The present tense is run.
The past tense of sit is sat. The past perfect tense of sit is had sat.
Neither: RAN (the second form of a verb is its Past Tense); as for your suggestions, only HAS RUN is correct, but it's a Present Perfect (you use the auxiliary HAVE + the third form = the Past Particle of the respective verb).
present tense past tense future tense present perfect tense past perfect tense future perfect tense present progressive tense past progressive tense future progressive tense present perfect progressive tense past perfect progressive tense future perfect progressive tense
The past tense of ran is ran. The future is run. The present is running. Had Run, had ran.