NCA
I dont know about Aeronautical Engineering but Aerospace Engineering it'd be Embry-Riddle Aeronautical University hands down. http://www.erau.edu/
The best choice to do electronics engineering in Pakistan would be "GIKI"
The University of Nairobi is known for offering aeronautical engineering programs and is considered one of the best colleges in Kenya for this field. They have strong connections to the aviation industry and offer hands-on training and research opportunities for students.
bzu
The RWTH Aachen (stand for "Rheinisch-Westfälische Technische Hochschule") is generally considered the best aeronautical engineering university in the country and one of the leading institutions in Europe. The city of Aachen is also a great place to live and study.
Aeronautical engineering or chemical engineering is GOOD
NFC institute of engg
Both software engineering and aeronautical engineering have some pros and cons . It depends on your interest that which field suits you best.
Center for Advanced Studies in Engineering (CASE) Islamabad
Aeronautical Engineering, Bio Tech Engineering, Automation Engineering
Nanjing University of Aeronautical and Astronautics , Beihang University ,Nanchong Hang Kong University are among the best which i know.And two of them also offer course in English
i think electronics engineering is best in pakistan