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Molecules are combinations of multiple atoms. In a chemical reaction, the bonds between the atoms are broken and new ones form, usually with a lower amount of energy than when they started. In a reaction such as synthesis of hydrogen (H2) and Oxygen (O2) to form water (H2O), the formula would look like this-

2(H2)+(O2)=2(H2O). there are there are three molecules on the left and two on the right. however the number of atoms are the same.

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Q: Why the the number of atoms conserved but the number of molecules is not in a chemical equation?
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