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H2 technically does contain molecules. Or at least, molecule. H2 is two hydrogens covalently bonded, so that the lowest energy level is filled. Since H2 has two atoms (hydrogen and hydrogen), it is not an element, because there is more than one atom. H2 is a molecule itself. However, in context of nature, it is rare that you would ever find an H2 molecule on its own unless you were working with one in a laboratory. So, if you were considering the whole of an H2 gas, there would be many molecules of H2.

Short answer: H2 is a molecule itself. Many H2 means there are many molecules of H2.

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