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I'd say 99% of all clone troopers obeyed, but a few, very rare clone troopers probably didn't obey Order 66 and worked in secret. In Star Wars: The Rise and Fall of Darth Vader, the author mentioned that Darth Sidious foretold that The Empire will have enemies. So the Empire had many enemies+Rebels.

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14y ago

What else can I help you with?