They steal the Sybmarine after you defeat Winnona. You must fly back to Slateport and enter the dock to see it happen. You will not be able to prevent it, but you must chase Team Magma for it.
I think it's around Route 127... Down from mossdeep city....
You will find the long underwater way...Drive there.... Just go down then you will find the cave .... Go in and....... SHADAA! Submarine!!
** This is my answer from Where_is_team_aquas_submarine_in_sapphire**
Remember: If you play Pokemon Sapphire or Emerald .... It will be Team aqua steal it. Not magma... But If ruby, Yes... Magma.
Route 128. In Hoenn map/Pokenav you can see there are only one dark blue area in route 128, watch there.
Team magma hid the submarine under water near by ever grande city
Just go to slate port city
to there secret base in lilycove city
in the cave where maxie somons Groudon
Under deep water around SOOTOPOLIS CITY.
Team Magma will not appear in the submarine but you will see them get away with it the first time. The second time you see the submarine, you have to dive to the seafloor cavern to go challenge Maxie.
If you are playing Pokemon Emerald, talk to the Old Lady at the top of Mt. Pyre and she'll give you the Magma Emblem. Take the Magma Emblem to Jagged Pass, south of Mt. Chimney, then find the door with the fire symbol on it. The Magma Emblem will activated the door and the entrance will open for you to go into Team Magma's Hideout.
No, you cannot be a member of Team Aqua / Team Magma in Sapphire.
it is in the jagged pass in the rock face three levels from the end but you need the magma emblem to get in though to get the magma emblem you go to mt. pyre go to the top and team aqua should be there beat them they will take the red orb and you talk to the lady and she gives you the magma emblem
There is no magma amulet in ruby. The location in which team magma's hideout is actually is the place where team aqua's hideout is in sapphire and emerald (i think you confused sapphire with emerald)
You go to their secret base just tright of lilycove
Team Magma will not appear in the submarine but you will see them get away with it the first time. The second time you see the submarine, you have to dive to the seafloor cavern to go challenge Maxie.
in their hideout in lilycove. surf on the sea and get in the big rock, there is also the submarine.
You have to go to Solopotis where u have to use dive to go up the submarine is there
Team Aqua/Magma took it underwater. Dive a look around for a secret entrance underwater and go in it. You will see the submarine. Then one you are at the sub, go up to the surface above it and defeat team Aqua/Magma.
in the cave where team magma escapes you in the submarine next to lilycove city
You need to find the submarine that team magma stole.
TEAM MAGMA GOES TO THEIR HIDEOUT IN THE JAGGED PASS.TEAM AQUA GOES TO SLATEPORT CITY TO STEAL CAPT STERN'S SUBMARINE.
they go in a deep sea trench in witch you need the hm dive. p.s. ITS TEAM AQUA.
Go to Mt. Pyre. Stop Team Aqua. A woman will give you the Magma Emblem. Go to the Jagged Pass. The floor will rumble and a door will open. Go there. That's Team Magma's hideout. Battle Maxie. Then go to Slateport. Team Aqua will steal the submarine. Then you can finally go to Team Aqua's hideout. (A master ball is there) And fight the executive. Then the Wailmers are finally gone.
im pretty sure its right of lilycove city and in a cave
Find the submarine Team Magma stole and defeat themand awaken Groudon