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The mucus linings of your bronchi (airways) are responsible for trapping some of the larger foreign particles that you breathe in all day every day. Cilia are responsible for moving that mucus upward and out of your airways to aid in expectoration (coughing up phlegm). If the cilia are destroyed, the foreign particles are trapped in your mucus linings and the mucus cannot be pushed out of your lungs and into you esophagus like usual. This can cause respiratory infections and increased coughing. Not to mention cigarette smoke destroys your type II pneumocytes in your alveoli, which causes pulmonary disorders like emphysema.

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