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Mainly Plutonium fuel.

They are usually started on highly enriched uranium (i.e., weapons grade) fuel, with a breeding blanket of depleted uranium surrounding the core. Over time the breeding blanket is periodically changed and the old one reprocessed to extract plutonium; which is used to make replacement fuel for the reactor (and sometimes others). So the reactor starts on uranium fuel and each time the fuel is replaced it transitions gradually to plutonium fuel.

It is also possible to tune a breeder reactor to operate as a plutonium burner (without breeding new fuel). Such a reactor would burn plutonium only. This has been suggested as an effective means of disposing of the current "excess" of plutonium removed from retired nuclear weapons.

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