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The quark-gluon plasma that composes the universe cools until hadrons, including baryons such as protons and neutrons, can form. At approximately 1 second after the Big Bang neutrinos decouple and begin traveling freely through space. This cosmic neutrino background, while unlikely to ever be observed in detail, is analogous to the cosmic microwave background that was emitted much later. The majority of hadrons and anti-hadrons annihilate each other at the end of the hadron epoch, leaving leptons and anti-leptons dominating the mass of the universe. Approximately 10 seconds after the Big Bang the temperature of the universe falls to the point at which new lepton/anti-lepton pairs are no longer created and most leptons and anti-leptons are eliminated in annihilation reactions, leaving a small residue of leptons. [Taken from Wikipedia, see link below]

So, to summarize, matter and anti-matter condense out of the quark-gluon plasma, a cosmic neutrino background is created, most matter and anti-matter is annihilated.

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