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The same reason that dice don't always roll numbers as expected. Random chance. genetic propagation of traits is much more complex and therefor even less predictable than dice.

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Do each set of chromosome define a character?

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His wife suspected that their progeny would all have large noses like his. The progeny of the original settlers built communities throughout the valley. The queen expected that her progeny, in their time, would likewise become monarchs of the realm.