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Of the six units at Fukushima Daiichi, three were operating at the time of the incident of March 11, 2011. When the earthquake occurred, the three operating units automatically shutdown, as they were designed to. The emergency diesel generators also started, as they were designed to.

Unfortunately, when the tsunami occurred about 41 minutes later, it was higher than the seawall was designed for, and it flooded low lying areas of the facility, taking out the diesels and parts of the switchgear, depriving the facility of power to run the emergency cooling system.

The facility still had its batteries, and its steam run coolant injection system was operational with those batteries, but it had no way to keep those batteries charged. Eventually, the batteries were depleted, and the fuel in the reactors was uncovered and allowed to overheat, damaging the fuel. The spent fuel pools, a water filled storage area for new and used fuel was also affected, and fuel there was damaged as well.

The reason this occurred is that the fuel, even though no longer involved in a nuclear chain reaction, still had decay heat from mixed fission byproducts; decay heat that requires cooling for a substantial length of time, even when it is out of the reactor.

Complicating everything was the issue of the multiple hydrogen explosions. The zircalloy clad fuel pins, when overheated and in contact with water, produces hydrogen gas. That gas collects. Normally, there are hydrogen recombiners in the steam cycle, but they were not available. When you add water to a hot system that contains hydrogen gas, there is the risk of explosion, and that did occur several times, damaging various components.

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