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Yes, the main difference is that in ruby, you can only catch groudon and maybe rayquaza (not sure). In emerald, you can catch rayquaza, kyogre, and groudon. All of the games are great though and there may be a few other minor differences, like which pokemon appear on a certain route. I know that in the town with Brawly as the gym leader (fighting) in th cave there are sableye in ruby, but not in salphire. Personal preferance is emerald because it is a mixture of ruby and saphire. Have fun!

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