All governments limit freedom. Each and every law and regulation reduces your individual freedoms and choices. Very few are justifiable.
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Nope, the US Constitution clearly states the freedom of belief.
It creates two sovereigns, the national government and the state governments
That is currently happening. Several governments limit the freedom of religion. As an example, in Iran, if you change your religion (from Muslim to something else) you can get executed for "apostasy".
It creates two sovereigns, the national government and the state governments
It can, by rational budget spending
The Bill of Rights limits government by giving citizens freedoms that cannot be taken away by the government such as freedom of speech, freedom of religion, and the right against search and seizure.
Limit the power of the Federal Government.
Limit the power of the Federal Government.
The goal was to strengthen the national government and to limit its power.
I would say Yes. If your "belief" breaks some existing law, the government can limit that belief. For example, if you believed (for religious reasons) in human sacrifice, the government would, of course, frown on that.
The purpose of the Constitution was to limit the national government by specifically enumerating the powers it had, leaving the power in the hands of the American people and the individual states.