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cloning, grafting... pest control studies, breeding for desired results such as co2 to oxygen conversion. we can and will affect them as well in years to come by creating machines to do jobs based on what we learn from plants and therefore when we (if we) populate other worlds perhaps we can make machines to get enough atmosphere control to grow plants on said planet. how ever our imagination wanders and we are able to follow with good solid researching and development indicates the answer to your question is endless.

of course someones going to have a negative response to my answer, but when it does come just examine their content of their negativeness and ill bet you they have no input whatsoever that reveals any sort of answer to your question nor will it be very productive at all, for they will be a troll, hoping to enrage me, so to them i give a hearty laugh, and tell then in precursor to grow up.

hahha (pretroll them before they troll you)

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Q: How can humans activities affect plants and their roles in the natural environment?
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