flown
Flown is just the past participle
had flown is the past perfect.
The bird had flown before I got to the nest.
The past perfect tense of "flee" is "had fled."
have/has flown = Present Perfect had flown = Past Perfect
The past tense of "exist" is "existed." The past perfect tense is "had existed."
The past tense of "bleed" is "bled." The past perfect tense of "bleed" is "had bled."
The past tense of sit is sat. The past perfect tense of sit is had sat.
The past perfect tense of hope is had hoped.
The past perfect tense of "submit" is "had submitted."
The past perfect tense of "confront" is "had confronted."
The past perfect tense is had rung.
The past perfect tense is had burned.
The past perfect tense is had bathed.
The past perfect tense of "learn" is "had learned."