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There is an ethnic and national conflict between Israelis and Palestinians and therefore there are several cases of Israeli Security Forces torturing Palestinians. Additionally, a number of the laws used in the Occupied Territories are subject only to Israeli Military Review which prevents Civil Law from taking action to prevent such abuses. However, it is incorrect to assume that all Israelis or even most Israelis torture Palestinians.
Yes. There are land disputes between Israelis and Palestinians and the land in dispute is located in Southwest Asia.
The West Bank
It depends which "Conflict in Israel" the question is asking about. If it is asking about the Israeli-Palestinian Conflict, the conflict is, strictly speaking, between Israelis and Palestinians which are national groups, not religious groups. However, the majority of Israelis are Jewish and the majority of Palestinians are Muslim. (However, there are numerous Muslim Israelis, Druze Israelis, and there are both Christian Israelis and Christian Palestinians.) If it is asking about Israel's internal political conflicts, they are often between Secular Jews and Religious Jews.
Israelis and Palestinians
It depends on the particular conflict, but the two territories most in contention between the Israelis and Palestinians are the Gaza Strip and the West Bank (including East Jerusalem). There is much contention between Israelis and Syrians over the Golan Heights and between Israelis and Lebanese there is some contention over the Shebaa Farms and the area south of the Litani River.
The Israel military occupation of the West Bank.
No. Neither of them are fighting "the Muslims" as a group. Most Palestinians are Muslims anyway. The Israeli-Palestinian Conflict is between two national groups: Israelis who are primarily Jewish against Palestinians who are primarily Muslim. However, neither Israeli nor Palestinian forces have declared that they are fighting Islam. There are numerous mosques in both countries where Muslim worshipers freely pray to God.
The state if Israel - the Israelis.
It depends on how they make that claim. Bedouin and Druze claim that Israel belongs to them as much as it belongs to the Jews and proudly call themselves Bedouin Israelis and Druze Israelis. A number of Arabs who formerly lived in what is now Israel or the Occupied Territories claim that the Jewish State is illegitimate and demand that country be returned to them for administration. These individuals are called Palestinians. (Admittedly, a number of Palestinians are willing to allow Israel to exist outside of the Occupied Territories, but there is no difference in naming between the Two-Staters and the One-Staters.)
The two territories that have been a continual battle zone between Israelis and Palestinian Arabs are the Gaza Strip and the West Bank. Some Jews identify the West Bank by the name of its Biblical Regions: Samaria (North of Jerusalem) and Judea (South of Jerusalem).
If you do a search on the web of casualty numbers for all wars and conflicts between Israelis and Palestinians, you can find the numbers although there are many different reports on numbers especially on the Arab side which is less exact. I took the higher estimates for all and counted approximately 19,000 Palestinians killed by Israelis and 18,885 Israelis killed by Palestinians and other Arabs since the start of the conflict in the 1920s. Also note that a further 18,300 Palestinians were killed by other Arab groups (Black September, War of the Camps, etc.). The amount of Israeli casualties from only conflicts with the Palestinians ranges from 2,000-3,000 individuals.