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Because of the asymmetry in pyrimidine and purine use in coding sequences, the strand with the greater coding content will tend to have the greater number of purine bases (Szybalski's rule). Because the number of purine bases will to a very good approximation equal the number of their complementary pyrimidines within the same strand and because the coding sequences occupy 80-90% of the strand, there appears to be a selective pressure on the third base to minimize the number of purine bases in the strand with the greater coding content and that this pressure is proportional to the mismatch in the length of the coding sequences between the two strands.

The origin of the deviation from Chargaff's rule in the organelles has been suggested to be a consequence of the mechanism of replication. During replication the DNA strands separate. In single stranded DNA, cytosine spontaneously slowly deaminates to adenosine (a C to A transversion). The longer the strands are separated the greater the quantity of deamination. For reasons that are not yet clear the strands tend to exist longer in single form in mitochondria than in chromsomal DNA. This process tends to yield one strand that is enriched in guanine (G) and thymine (T) with its complement enriched in cytosine (C) and adenosine (A), and this process may have given rise to the deviations found in the mitochondria.

Chargaff's second rule appears to be the consequence of a more complex parity rule: within a single strand of DNA any oligonucleotide is present in equal numbers to its reverse complementary nucleotide. Because of the computational requirements this has not been verified in all genomes for all oligonucleotides. It has been verified for triplet oligonucleotides for a large data set. Albrecht-Buehler has suggested that this rule is the consequence of genomes evolving by a process of inversion and transposition. This process does not appear to have acted on the mitochondrial genomes. Chargaff's second parity rule appears to be extended from the nucleotide-level to populations of codon triplets, in the case of whole single-stranded Human genome DNA

A kind of "codon-level second Chargaff's parity rule" is proposed as follows:

Codon populations where 1st base position is T are identical to codon populations where 3rd base position is A:

« % codons Twx ~ % codons yzA » (where Twx and yzA are mirror codons i.e TCG and CGA).

Codon populations where 1st base position is C are identical to codon populations where 3rd base position is G:

« % codons Cwx ~ % codons yzG » (where Cwx and yzG are mirror codons i.e CTA and TAG).

Codon populations where 2nd base position is T are identical to codon populations where 2nd base position is A:

« % codons wTx ~ % codons yAz » (where wTx and yAz are mirror codons i.e CTG and CAG).

Codon populations where 2nd base position is C are identical to codon populations where 2nd base position is G:

« % codons wCx ~ % codons yGz » (where wCx and yGz are mirror codons i.e TCT and AGA).

Codon populations where 3rd base position is T are identical to codon populations where 1st base position is A:

« % codons wxT ~ % codons Ayz » (where wxT and Ayz are mirror codons i.e CTT and AAG).

Codon populations where 3rd base position is C are identical to codon populations where 1st base position is G:

« % codons wxC ~ % codons Gyz » (where wxC and Gyz are mirror codons i.e GGC and GCC).

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Related Questions

What did Erwin Chargaff conclude about the four bases?

A=T and C=G


What are chargaff rules?

Chargaff's rule is adenine ALWAYS goes with thymine guanine ALWAYS goes with cytosine


Who showed that DNA contains equal amounts of certain nitrogen bases?

Chargaff


Who discovered the nitrogenous bases of DNA please need this quick.?

Erwin Chargaff is credited with discovering the nitrogenous bases of DNA and establishing the base pairing rules (Chargaff's rules) that helped lead to the discovery of the double-helix structure of DNA by Watson and Crick.


Who discovered that the bases of dnaattach to the deoxyribose sugars?

Erwin Chargaff discovered that the bases of DNA (adenine, thymine, cytosine, and guanine) attach to the deoxyribose sugars. Chargaff's rules state that in DNA, the amount of adenine always equals the amount of thymine, and the amount of cytosine always equals the amount of guanine.


Who discovered that the percent of bases in DNA varies from organism to organism?

Erwin Chargaff discovered that the percentage of adenine (A) is equal to thymine (T) and the percentage of guanine (G) is equal to cytosine (C) in DNA. This discovery is known as Chargaff's rules and laid the foundation for understanding the structure of DNA.


Whose research indicated that the bases in DNA must mach with each other in some regular pattern?

Erwin Chargaff's research in the 1940s revealed that the amount of adenine in DNA always equaled the amount of thymine, and the amount of guanine equaled the amount of cytosine. This finding indicated that the bases in DNA must pair up in a specific and consistent manner.


What did Erwin Chargaff accomplish in his life?

Erwin Chargaff proposed two main rules in his lifetime which were appropriately named Chargaff's rules. The first and best known achievement was to show that in natural DNA the number of guanine units equals the number of cytosine units and the number of adenine units equals the number of thymine units. The second of Chargaff's rules is that the composition of DNA varies from one species to another, in particular in the relative amounts of A, G, T, and C bases. Such evidence of molecular diversity, which had been presumed absent from DNA, made DNA a more credible candidate for the genetic material than protein.


What are Chargaff's rules for the pairing of nitrogen bases in DNA?

Chargaff's rules state that in DNA, the amount of adenine (A) equals the amount of thymine (T), and the amount of guanine (G) equals the amount of cytosine (C). This means that A always pairs with T, and G always pairs with C in DNA.


Who hypothesized that nitrogen bases in DNA occur in pairs?

James Watson and Francis Crick are credited with the base pairing rules and DNA structure in general. Erwin Chargaff is credited with the rules of base pairs in that the number of pyrimidines is equal to the number of purines.


How are the base pairing rules related to Chargaff on DNA?

Chargaff's rules state that DNA from any cell of all organisms should have a 1:1 ratio of pyrimidine and purine bases and, more specifically, that the amount of guanine is equal to cytosine and the amount of adenine is equal to thymine.


How do the nitrogen bases pair up during replication?

By forming matching hydrogen bonds.