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Colored pigments in a cell are primarily found in organelles known as plastids, particularly chloroplasts in plant cells, which contain chlorophyll that gives plants their green color and is essential for photosynthesis. Other pigments, such as carotenoids and anthocyanins, are also present in plastids and contribute to various colors in plants. Additionally, pigments can be found in other cell types, such as the melanin in skin cells of animals, which provides color and protection against UV radiation.

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