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The stipe (stem) of a mushroom is essentially used to mediate the spore dispersal of the fungi (hence a stronger flavor). It is also used to help lift the cap above the grass and other surroundings to get closer to it's host or disperse farther. As far as for using it with food: if the cap's edible- then yes the stem is as well. The taste may be a bit stronger and the density a bit different. So, personal preference

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