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Assuming that the deletion occurs somewhere in the protein coding region of an organism's DNA - that is any where within it's Genome excluding introns and other non-expressed regions - :

mRNA sequence (transcribed from DNA) is translated into protein using triplet - codons, meaning that three consecutive nucleotide bases code for one amino acid (a building block of the protein chain). For example:

UUU CCU CAA A.... (nucleotides) codes for

Phe Pro Asn ... (3 letter abbr. for amino acids). Now, if the first nucleotide gets deleted, we get:

UUC CUC AAA that translates into:

Phe Leu Lys .

What happens is that triplets shift to the right by one nucleotide and that changes the meaning of all triplets that follow resulting in a protein with a different amino acid composition [sequence] that almost for certain has lost its intended function or even becomes damaging to the organism - these are rarely beneficial due to the following: these are called Frame-Shift mutations and you are quite right they usually have quite a deleterious effect.

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