What classical theories are still in use today?

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E=mc squared
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Is classical and operant conditioning still practiced today?

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Dalton's atomic theory is it still believed today?

of course Dalton's atomic theory is still believed today. but it has some defects, like his first postulate states that an atom is indivisible. but as you know its not correct

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How is quantum theory used today?

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Plato's theories are useful as an important part of the history of philosophy. Plato was historically influential, but his theories are not accepted today as being philosophic
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Is Johannes keplers theory still accepted today?

Yes. Of course it has been considerably elaborated upon, based onthe knowledge and technological aids we now have, but his generalconcepts still hold true.