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There is some glitch involving the phazon suit, or it just doesn't count towards your completion percentage. In either case, the last item you obtain counts as 2% (in your case, the final missile expansion).

Actually, unlike you, I have 255 missiles, still 14 energy tanks, 10 power bombs and all 12 artifacts. you are missing two missile expansions and two power bomb expansions.

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Q: In Metroid prime you have 245 missiles 14 energy tanks 8 power bombs and all 12 artifacts as well as 100 percent of scans but why is your item completion percentage is only 98 percent?
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