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The one in your browser tends to use less ram but lags more, and is in a smaller window.

Edit-Actually the difference is minimal the downloaded version you can mod on the using the minecraft forum there is a ton of texture mods to improve the visual quality. Doku Rpg, John Smith and Mixcraft are my 3 favs. Also if you decide to use the browser version you can simply hit F11 to full screen it.

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Q: What is the difference between minecraft alpha in your browser and downloaded alpha?
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