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No, the AirTrain takes you to and from the subway, and the subway takes you to and from Penn Station. Take the AirTrain to the Howard Beach Station, and get the Manhattan-bound A train (of the A-C-E, the blue line) to 34th Street-Penn Station.
Take the Metro-North train (see the Related Link below for schedules and fares) from Larchmont to Harlem-125th Street (at Lexington Avenue).At 125th Street and Lexington Avenue, get the Downtown 6train (of the 4-5-6, the dark green line) to 51st Street.Transfer is available between the 51st Street Station on the 6 train and the 53rd Street-Lexington Avenue Station on the E train (of the A-C-E, the blue line). Take the Downtown E to 34th Street-Penn Station.
Take the Uptown E train (of the A-C-E, the blue line) from 34th Street-Penn Station to 5th Avenue-53rd Street. Then walk 2 blocks south on 5th Avenue to St. Patrick's (on 5th Avenue between 51st and 50th Streets).
Take the Downtown 2 or 3 trains (of the 1-2-3, the red line) from 34th Street-Penn Station to Wall Street (at William Street).
The address 198 East 76th Street is at the corner of 3rd Avenue. Take the Downtown 6 train (of the 4-5-6, the dark green line) from 77th Street (at Lexington Avenue, which is one block west of 3rd Avenue) to 51st Street.The 51st Street Station on the 6 train is connected to the Lexington Avenue-53rd Street Station on the E train (of the A-C-E, the blue line) and the M train (of the B-D-F-M, the orange line), so you can transfer without exiting the subway system.Transfer to the Downtown E train, and take the Downtown E from Lexington Avenue-53rd Street to 34th Street-Penn Station.
Yes, the A express train goes from Penn Station to Chambers Street. It's 4 stops (unless you are traveling at night, when the A runs local). The Chambers Street station on the A and C trains is at Church Street.
Take the Uptown E train (of the A-C-E, the blue line) from 34th Street-Penn Station to Court Square.
You don't need to take the subway to get from Penn Station to 28th Street and 8th Avenue (which is in the Chelsea neighborhood, by the way, not in Greenwich Village or Greenwich Connecticut). Penn Station is at 34th Street between 8th and 7th Avenues. So you can just walk there.
Take the Uptown 1-2-3 (the red line) from 34th Street-Penn Station to 42nd Street-Times Square, and transfer there to the N.
Penn Station is at 34th Street so it is 20 blocks away from 54th St. You would take the subway two stops north.
Take the Uptown E train (of the A-C-E, the blue line) from 34th Street-Penn Station to Lexington Avenue-53rd Street. This station is connected to the 51st Street Station on the 6 train (of the 4-5-6, the dark green line), so you can transfer without exiting the subway system. Transfer to the 6, and take the Downtown 6 to 33rd Street, 28th Street, 23rd Street or 14th Street. All of these stops are on Park Avenue South.
Take the Downtown 1 train (of the 1-2-3, the red line), 1 stop, from 34th Street-Penn Station to 28th Street (at 7th Avenue).