Two types of bond formation takes place in a secondary protein:
1. peptide bond due to amides
2. hydrogen bond
secondary structure ,hydrogen bonds
Secondary Structure of protein
Enzymes are almost all proteins. They are often globular proteins. We can describe them in terms of their primary, secondary, tertiary and quaternary structure. They are long chains of amino acid units held together by peptide bonds, looped and folded into secondary and tertiary structures by disulfide bonds, hydrophobic interactions, and salt bridges.
Yup. Amino acids are chemically bonded together. That's a chemical change. There are also other non-chemical bonds that form the secondary, tertiary and quarternary structure of proteins...
The primary structure of a protein is just an amino acid string; a polypeptide. The secondary structure of a protein is the hydrogen bonding of the side chains that form the polypeptide chain into alpha helices and beta sheets.
The bonds are covalent.
hydrogen bonds
alpha Helix and Beta pleated sheet
secondary, tertiary, and quaternary structures, but not primary structure
Secondary tertiary is the R groups interactions that are ionic. The polypeptide chain also has disulfide bond, and hydrophobic interactions.
regularly spaced hydrogen bondings
Tertiary structure
The primary structure is a one or two dimensional structure, whereas the secondary structure is a three dimensional structure in which different parts of the protein molecule bend and twist due to the formation of hydrogen bonds between atoms. This makes the secondary structure shorter than the primary structure.
secondary structure ,hydrogen bonds
One secondary structure, α helix, is a delicate coil held together by hydrogen bonds every 4th amino acid. A structure with α helix is keratin, the material the human body uses to produce hair. The other secondary structure is β pleated sheet. In this one, two or more strands of β strands are connected by hydrogen bonds between parts of two parallel polypeptide backbones. This secondary structure is what spider webs are made of, and the hydrogen bonding makes it stronger than a strand of steel of the same weight. These secondary structures are unable to be formed without hydrogen bonding.
While it is possible to predict likely secondary structures of a protein from its primary structure, only knowing the secondary structure, the general 3-D shape of local areas of the protein, cannot yield the primary structure.
Proteins *have* primary, secondary, tertiary, and quarternary structures. The primary structure is simply the chain of amino acids without any other structure. Secondary structure results from folding of the chain to form rudimentary structures such as alpha helices, beta sheets and turns. Tertiary structure results from the further folding of the protein with secondary structures into different 3D shapes by interactions between different parts of the secondary structure. Quarternary structure results from different proteins with tertiary structures coming together to form a protein complex.