Any brand coolant will work.
5.5 quarts with oil/filter change.
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Follow the transmission dipstick which is located just below your right windshield wipers in the engine bay. You should see a pan with a 10mm bolt ref. to auto trans 1999 toyota 4runner
Second cylinder from the front (middle) on the driver side is #4.
Not having anymore info. other than it was in a rollover, the engine head could be cracked and allowing coolant to get into the combustion chamber which could explain smoking at start up and after the engine is warm. Check your coolant tank for any oil residue - if there is oil in the tank, you've got a engine head problem and your best bet is to get a new head after verifing that the block isn't also damaged.
check engine usually is emissions related, try resetting by disconnect negative battery terminal for about 5-10 minutes.
no
2
The 1999 Toyota 4runner OBD 2 port is under driver side dash near center console
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Yes, it should fit perfectly.