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They are probably spawning. The ones doing the chasing will be males the ones being chased will be the females. If you look closely at the fishes gill plates you will notice white dots/spots on them. There could also be the same kind of spots on the fishes pectoral fins. They are not disease they are the markings males of the species (Carassius sp.) develop when they are in breeding condition.

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Q: Your koi and comets are chasing your shubunkin around is there something you can do or why do they do this?
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