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When using both Windows Server 2003 and Windows Server 2008 as Domain Controllers (DCs), special considerations include compatibility issues, as Windows Server 2008 introduces features like the Active Directory Domain Services (AD DS) enhancement and the ability to use the new Windows Server 2008 functional level. It is crucial to ensure that the domain is operating at a functional level that supports both versions, typically at Windows Server 2003 functional level for seamless interoperability. Additionally, certain security features in Windows Server 2008, such as enhanced authentication protocols, may not be fully supported by Windows Server 2003, which could lead to potential vulnerabilities. Regular updates and careful planning for migration are essential to minimize risks during co-existence.

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