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Bromophenol blue or commasive blue functions as a sample staining dye or DNA staining dye it is mixed with sample before loading the sample in wells. The migration of bromophenol blue is same as of DNA i.e. it carries negative charge and move in same direction of DNA with the speed equals to 200-400bp of DNA.
It also prevent backflow of sample in vertical gel electrophoresis as the sample is light from the loading buffer which tends to come back from the well so bromophenol blue prevent the back flow.
IUPAC NAME:2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxyphenyl)-1,1-dioxo-3-benzooxathiolyl]phenol.
Bromphenol blue does not stain DNA. It is simply a dye that 1) helps you visualise your sample as you load it and 2) migrates (unrelated to the DNA) at a speed that is indeed equivalent to about 200-400bp of DNA, depending on the percentage of gel, giving an indication of how far your samples have run. It also does not prevent "backflow". Usually the buffer which you add to your DNA sample before loading on a gel (ie loading buffer) contains a dye such as bromophenol blue (there are others) and will also contain a dense substance, usually glycerol or ficoll. It is the glycerol or ficoll which due to its density will make the sample more dense than the buffer which the gel is run in, and will prevent it floating out of the well.
In order to visualise (stain) the DNA you need an agent such as ethidium bromide or sybr green that intercalates with the DNA (slides between the basepairs) and fluoresces under UV light.
Coommassie (not commasive) blue is a dye that will stain proteins (not DNA) but is used after the gel has been run to stain the gel. If you use it with an agarose gel, I'm guessing - having never tried it) you would just simply make a big blue mess and not see anything.
What else can I help you with?
What gel is typically used in electrophoresis experiments?
The gel typically used in electrophoresis experiments is agarose gel.
Function of agarose in agarose gel electrophoresis?
Agarose is used in gel electrophoresis to separate nucleic acids (like DNA) by size, charge an other physical properties. Gel electrophoresis uses an electrical current to make particles move. For example, DNA is negative, so it'll travel towards to positive electrode of the gel box. Agarose has small pores through which a DNA can travel. Bigger fragments of DNA travel shorter distances, because it takes longer for them to navigate through the pores of the agarose gel. Identically sized pieces of DNA will travel the same distance, which is why you get bands (DNA with loading dye) after you run a a gel.
What is the purpose of using a buffer in agarose gel electrophoresis?
The purpose of using a buffer in agarose gel electrophoresis is to maintain a stable pH and provide ions that help conduct electricity, allowing the DNA or other molecules to move through the gel.
what is the gel in Gel Electrophoresis?
The gel in gel electrophoresis is typically made of agarose or polyacrylamide. It acts as a matrix to separate DNA, RNA, or proteins based on size and charge as an electric current passes through it. Agarose gels are commonly used for DNA analysis, while polyacrylamide gels are often used for higher resolution protein separation.
What are the differences between agarose gel electrophoresis and SDS-PAGE techniques for separating and analyzing biomolecules?
Agarose gel electrophoresis separates biomolecules based on size and charge, while SDS-PAGE separates based on size and mass. Agarose gel is used for larger molecules like DNA and RNA, while SDS-PAGE is used for proteins. Agarose gel uses a gel made from agarose, while SDS-PAGE uses a gel made from polyacrylamide.
What is a common name for gel electrophoresis?
Agarose gel electrophoresis.
Is agarose gel electrophoresis suitable for only gram negative plasmid DNA?
Agarose gel electrophoresis is suitable for ALL DNA.
What gel is typically used in electrophoresis experiments?
The gel typically used in electrophoresis experiments is agarose gel.
Preparation of 1 percent agarose gel or How to prepare 1 percent agarose gel?
Check the answer for How do you make an electrophoresis gel?
Function of agarose in agarose gel electrophoresis?
Agarose is used in gel electrophoresis to separate nucleic acids (like DNA) by size, charge an other physical properties. Gel electrophoresis uses an electrical current to make particles move. For example, DNA is negative, so it'll travel towards to positive electrode of the gel box. Agarose has small pores through which a DNA can travel. Bigger fragments of DNA travel shorter distances, because it takes longer for them to navigate through the pores of the agarose gel. Identically sized pieces of DNA will travel the same distance, which is why you get bands (DNA with loading dye) after you run a a gel.
What has the author A J Houtsmuller written?
A. J. Houtsmuller has written: 'Agarose-gel-electrophoresis of lipoproteins' -- subject(s): Blood protein electrophoresis, Electrophoresis, Gel electrophoresis, Lipoproteins
What is the purpose of using a buffer in agarose gel electrophoresis?
The purpose of using a buffer in agarose gel electrophoresis is to maintain a stable pH and provide ions that help conduct electricity, allowing the DNA or other molecules to move through the gel.
what is the gel in Gel Electrophoresis?
The gel in gel electrophoresis is typically made of agarose or polyacrylamide. It acts as a matrix to separate DNA, RNA, or proteins based on size and charge as an electric current passes through it. Agarose gels are commonly used for DNA analysis, while polyacrylamide gels are often used for higher resolution protein separation.
What are the differences between agarose gel electrophoresis and SDS-PAGE techniques for separating and analyzing biomolecules?
Agarose gel electrophoresis separates biomolecules based on size and charge, while SDS-PAGE separates based on size and mass. Agarose gel is used for larger molecules like DNA and RNA, while SDS-PAGE is used for proteins. Agarose gel uses a gel made from agarose, while SDS-PAGE uses a gel made from polyacrylamide.
What is the function of agarose gel electrophoresis?
Agarose gel electrophoresis is used to separate DNA fragments based on size. When an electric current is applied to the gel, DNA molecules move through the pores of the gel at different rates depending on their size, allowing for visualization and analysis of DNA fragments in a sample.
What is the functions of UV transilluminator in genetic laboratory?
to vizualise DNA after Agarose gel electrophoresis
What are common troubleshooting steps for resolving issues with agarose gel electrophoresis?
Common troubleshooting steps for resolving issues with agarose gel electrophoresis include checking the quality of the agarose gel, ensuring proper buffer preparation and pH, verifying correct voltage and running time, confirming proper loading of samples, and troubleshooting equipment issues such as power supply or gel box problems.
