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What are the common challenges faced when dealing with restriction mapping problems?

Common challenges faced when dealing with restriction mapping problems include difficulties in accurately determining the order and distances between restriction sites, resolving overlapping fragments, and interpreting complex patterns of restriction enzyme digestion. Additionally, issues such as incomplete digestion, DNA degradation, and variations in enzyme activity can complicate the mapping process.


Why you add distilled water in restriction digestion of lambda DNA along with enzyme and assay buffer?

We generally add milliQ (DNase free) water. For digestion water is added usually. It provides right Hydrogen bonds between enzyme amino acid residues and bases present in the restriction sites. Utpal Roy


What is The role of buffer in restriction digestion reactions?

I believe that it is used to stabilize the pH levels so the enzyme activity isn't effected.


An enzyme that cuts double-stranded DNA at specific nucleotide sequences?

Such an enzyme is called a restriction endonuclease


Which restriction enzyme did you use to cut the DNA?

The restriction enzyme used to cut the DNA was EcoRI.


What type of enzyme is used to fragment dna?

Restriction enzymes are used to fragment DNA by cutting it at specific recognition sites. These enzymes are naturally found in bacteria as a defense mechanism against foreign DNA, and are commonly used in molecular biology techniques like restriction enzyme digestion.


Hi does any one know if I want to put some restriction enzyme close to cDNA should I put some nucleotide befor this restriction enzyme?

Restriction enzyme cuts DNA strand at specific locations Restriction enzyme cuts DNA strand at specific locations


What is the role of BSA in restriction enzyme activity?

BSA is used to stabilize some enzymes during digestion of DNA and to prevent adhesion of the enzyme to reaction tubes and other vessels. This protein does not affect other enzymes that do not need it for stabilization.


Where does the restriction enzyme EcoRI cut in a DNA sequence?

The restriction enzyme EcoRI cuts DNA at a specific sequence of bases, which is GAATTC.


What is the difference between a restriction enzyme and an endonuclease?

A restriction enzyme is a type of endonuclease. Endonucleases are enzymes that cut DNA at specific sequences, while restriction enzymes specifically cut DNA at recognition sites called restriction sites.


Where in the DNA sequence does the restriction enzyme EcoR1 specifically cut?

The restriction enzyme EcoR1 specifically cuts the DNA sequence at the recognition site GAATTC.


What enzyme is responsible for cutting DNA molecules?

The enzyme responsible for cutting DNA molecules is called a restriction enzyme.