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The Class I MHC molecules process endogenous(intracellular) peptides/antigens whereas the Class II process exogenous(extracellular) peptides/antigens.

The Class I molecules are assembled and located in the ER whereas the Class II are assembled in the ER but located in the endosomes.

When extracellular peptides are taken into the cell via receptor mediated endocytosis or phagocytosis, they will be transported into the endosomes and get degraded. This will enable the peptide generated to be loaded onto the Class II molecules.

For Class I, when a bacteria or virus infect a cell, they will replicate and produce proteins. These proteins will be ubiquitinated and degraded by the proteasome. This smaller peptides can then be transported into the ER via the TAP transporters, that are complexed with the Class I molecules, to be loaded onto the Class I molecules.

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