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If the transmission has not been run with the water in it, then chances are you can drain, refill & run the transmission using a cheater hose instead of an oil cooler. Do this a few times then reconnect the new oil cooler & top off the transmission with enough fluid to fill the transmission & cooler circuit. If the transmission was run with the water in it, then you should disassemble & clean out the inside. Make sure to "pop" out the reverse & forward pistons to get the water out. Reassemble & fill transmission with enough fluid to fill transmission & cooler circuit. Answered by Scott @Marine Gear & Power systems, Ft. Lauderdale, FL. email: margear@bellsouth.net

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Q: Borg-Warner velvet transmission mercruiser marine application oil cooler leaked water into trans how do you flush trans prior to replacing oil cooler?
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