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To produce a recombinant plasmid and the foreign DNA are cut with a different restriction enzyme?

When producing a recombinant plasmid, the plasmid and foreign DNA are cut with the same restriction enzyme(s) to generate complementary sticky ends for ligation. Using different restriction enzymes would create incompatible ends that cannot be ligated together effectively, making it difficult to form a functional recombinant plasmid.


What is a sticky end?

A Sticky End, referring to Biology is recombinant DNA. After DNA has been cut by a restriction enzyme it has "sticky ends" or recombinant DNA at the ends.


Why must the donor DNA containing the desired gene and the plasmid DNA be cut with the same restriction enzyme?

If they aren't cut with the same restriction enzymes, they will not fit with each other. Say one r.enzyme cuts AA/GC CT and another cuts GA/TTT CC. If you try to fit them TT CG/GA CT AAA/GG together, one sticky end "GC" will not fit with the other sticky end "AAA". so you have to cut them with the same r.enzymes to let them fit.


What are the unpaired nucleotides produced by the action of restriction enzymes referred to as?

The unpaired nucleotides produced by the action of restriction enzymes are referred to as sticky ends due to their single-stranded overhangs that can base pair with complementary sequences. These sticky ends are useful for facilitating the insertion of a piece of DNA into a plasmid during molecular cloning.


The restriction enzyme used in constructing hybrid molecules of certain gene sequences and plasmid DNA acts by?

recognizing specific DNA sequences (restriction sites) on both the gene sequence and plasmid DNA, and cutting the DNA at these sites. This creates compatible ends that can be ligated together to form a hybrid molecule. The enzyme ensures precise, targeted manipulation of DNA sequences in genetic engineering applications.


Why do you use the same restriction enzyme when you splice together two separate things?

Using the same restriction enzyme when splicing DNA into plasmids, etc., is effective as restriction enzymes are site-specific. Therefore, the spliced DNA will be able to complementary base pair with the ends of the spliced plasmid due to the identical recognition sites. Since the two molecules have the same sticky ends, they will be able to fit together.


How is a human gene recombined into a bacterial plasmid?

One of the most common ways these days is from cDNA. RNA is extracted from human cells, purified, and then treated with an enzyme called reverse transcriptase which is able to make DNA from RNA templates (this DNA made from RNA is called cDNA). The advantage of using cDNA is that in the genome human genes are typically distributed across multiple exons spread over tens or even hundreds of thousands of basepairs of DNA. Such a massive segment of DNA is extremely hard to manipulate and far too large to insert into a plasmid. However, in cDNA, all the introns have been spliced out (because cDNA is made from mature mRNA). To isolate a particular gene from cDNA, PCR is often used to selectively amplify one gene's cDNA using specific primers. To insert the amplified cDNA into a plasmid, the traditional approach was to use restriction enzymes - enzymes that cut precise DNA sequences. The great thing about many restriction enzymes is that they cut DNA but leave behind "sticky ends". Thus if you cut both your cDNA and a plasmid with a particular restriction enzyme, the resulting sticky ends will allow the human cDNA to be taken up by the plasmid (the sticky ends will mesh). The sticky ends will have to be sealed by an enzyme called DNA ligase. However, there are other ways these days - often involving recombination to insert the PCR product directly into a plasmid without resorting to restriction enzymes and ligations.


A restriction enzyme is likely to cut which kind of molecules?

DNA molecules. A strand of DNA molecules can be cut to have blunted ends or jagged ends (sticky ends).


What does the term sticky ends refer to in gene splicing?

Sticky ends are produced by cutting the DNA in a staggered manner within the recognition site producing single-stranded DNA ends. These ends have identical nucleotide sequence and are sticky because they can hydrogen-bond to complementary tails of other DNA fragments cut by the same restriction enzyme.


What seals the sticky ends of restriction fragments to make recombinant DNA?

These sticky ends, if they two pieces match, they will join together to form a recombinant DNA.


What is the most logical sequence of steps for splicing foreign DNA into a plasmid and inserting the plasmis into a bacterium?

Cut the plasmid and foreign DNA with the same restriction enzyme to create complementary sticky ends. Mix the cut plasmid and foreign DNA together and ligate them using DNA ligase. Introduce the ligated plasmid into the bacterium using a method like transformation, where the bacterium uptakes the plasmid. Select for transformed bacteria using antibiotic resistance or another selectable marker on the plasmid.


Why does a gene fit into the opening in the plasmid?

The gene fits into the opening in the plasmid because the ends of the gene and the plasmid have been cut by specific enzymes to create complementary "sticky ends" that can bind together. This process is known as ligation, which joins the gene and the plasmid together to create a recombinant DNA molecule.