It splices the genome or plasmid in a specific location (EcoRI).
It splices the genome or plasmid in a specific location (EcoRI).
The specific DNA sequence recognized by the EcoRI restriction enzyme, known as the EcoRI cut site, is 5'-GAATTC-3'.
The restriction enzyme EcoRI cuts DNA at a specific sequence of bases, which is GAATTC.
The restriction enzyme used to cut the DNA was EcoRI.
Yes, pBR322 contains EcoRI restriction sites. Specifically, there are two EcoRI sites located within the plasmid's multiple cloning site (MCS), allowing for the insertion of foreign DNA. This feature makes pBR322 a useful vector for cloning purposes in molecular biology.
EcoRI and HindIII are restriction enzymes commonly used in molecular biology to cut DNA at specific sequences. They are named after the bacteria species where they were first isolated, Escherichia coli RY13 and Haemophilus influenzae Rd, respectively.
If the plasmid has 3 recognition sequences for a given restriction endonuclease, then 4 linear DNA fragments are obtained because, if the DNA is linear then the number of fragments obtained is (N+1) whereas if the DNA is circular then the number of fragments obtained will be N for N recognition sequences for the given restriction endonuclease in a plasmid.
Bacteria. The enzymes are typically named after the bacteria also. For example EcoRI comes from E. coli and HindIII comes from H. influenzae.
A restriction enzyme (also known as restriction endonuclease) is protein which cuts DNA up at specific sequences (called restriction sites) in a genome. For example, the commonly used restriction endonuclease EcoRI recognizes every DNA sequence GAATTC and cuts at the point between the guanine and the adenine in that sequence, forming blunt ends (or straight, even ends). Interestingly and coincidentially, the restriction site for most restriction enzymes are genetic palindromes (the sequence reads exactly the same backwards on the complementary strand). In the case of EcoRI, the two complementary DNA strands for the restriction site are:5'-- GAATTC --3'3'-- CTTAAG --5'After this DNA sequence is cut, it might look something like this:5'-- G AATTC --3'3'-- C TTAAG --5'
The multiple cloning sites (MCS) in pUC18 and pUC19 is the difference - the MCS in pUC19 is reverse orientated to those of the pUC18.pUC18: LacZ HindIII PaeI ..... SacI EcoRIpUC19: Lacz EcoRI SacI ..... PaeI HindIII
Two different restriction enzymes commonly used to cut the pUC19 plasmid are EcoRI and PstI. For cutting the lux gene DNA, the restriction enzymes commonly used are NcoI and HindIII.
because you need the phosphate of the foreign DNA fragment for ligation. If not inactivated before you add the fragment, SAP will imediately remove the phosphate form your fregment too leaving you with two dephosphorylated fragments that are not easy to ligate..